Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF428 and GFF429 are separated by 15 nucleotides GFF429 and GFF430 are separated by 40 nucleotides
GFF428 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 463,577 to 465,073
GFF428
GFF429 - RND efflux system, inner membrane transporter, at 465,089 to 468,358
GFF429
GFF430 - RND efflux system, membrane fusion protein, at 468,399 to 469,649
GFF430
Position (kb) 465
466
467
468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 464.430 kb on + strand, within GFF428 at 464.430 kb on + strand, within GFF428 at 464.490 kb on + strand, within GFF428 at 464.490 kb on + strand, within GFF428 at 464.490 kb on + strand, within GFF428 at 464.490 kb on + strand, within GFF428 at 464.490 kb on + strand, within GFF428 at 464.490 kb on + strand, within GFF428 at 464.491 kb on - strand, within GFF428 at 464.491 kb on - strand, within GFF428 at 464.491 kb on - strand, within GFF428 at 464.491 kb on - strand, within GFF428 at 464.604 kb on + strand, within GFF428 at 464.613 kb on + strand, within GFF428 at 464.613 kb on + strand, within GFF428 at 465.261 kb on + strand at 465.261 kb on + strand at 465.261 kb on + strand at 465.261 kb on + strand at 465.261 kb on + strand at 465.261 kb on + strand at 465.261 kb on + strand at 465.262 kb on - strand at 465.262 kb on - strand at 465.262 kb on - strand at 465.262 kb on - strand at 465.650 kb on + strand, within GFF429 at 465.650 kb on + strand, within GFF429 at 465.650 kb on + strand, within GFF429 at 465.650 kb on + strand, within GFF429 at 465.651 kb on - strand, within GFF429 at 465.651 kb on - strand, within GFF429 at 465.651 kb on - strand, within GFF429 at 465.651 kb on - strand, within GFF429 at 465.651 kb on - strand, within GFF429 at 465.660 kb on + strand, within GFF429 at 465.660 kb on + strand, within GFF429 at 465.661 kb on - strand, within GFF429 at 465.661 kb on - strand, within GFF429 at 465.661 kb on - strand, within GFF429 at 465.744 kb on + strand, within GFF429 at 465.744 kb on + strand, within GFF429 at 465.744 kb on + strand, within GFF429 at 465.745 kb on - strand, within GFF429 at 465.745 kb on - strand, within GFF429 at 465.745 kb on - strand, within GFF429 at 465.745 kb on - strand, within GFF429 at 465.745 kb on - strand, within GFF429 at 465.835 kb on - strand, within GFF429 at 465.873 kb on + strand, within GFF429 at 465.873 kb on + strand, within GFF429 at 465.882 kb on + strand, within GFF429 at 465.882 kb on + strand, within GFF429 at 465.882 kb on + strand, within GFF429 at 465.882 kb on + strand, within GFF429 at 465.883 kb on - strand, within GFF429 at 465.883 kb on - strand, within GFF429 at 465.883 kb on - strand, within GFF429 at 465.883 kb on - strand, within GFF429 at 465.883 kb on - strand, within GFF429 at 466.002 kb on + strand, within GFF429 at 466.032 kb on + strand, within GFF429 at 466.032 kb on + strand, within GFF429 at 466.032 kb on + strand, within GFF429 at 466.032 kb on + strand, within GFF429 at 466.033 kb on - strand, within GFF429 at 466.033 kb on - strand, within GFF429 at 466.033 kb on - strand, within GFF429 at 466.033 kb on - strand, within GFF429 at 466.065 kb on + strand, within GFF429 at 466.065 kb on + strand, within GFF429 at 466.066 kb on - strand, within GFF429 at 466.066 kb on - strand, within GFF429 at 466.080 kb on + strand, within GFF429 at 466.080 kb on + strand, within GFF429 at 466.080 kb on + strand, within GFF429 at 466.080 kb on + strand, within GFF429 at 466.081 kb on - strand, within GFF429 at 466.081 kb on - strand, within GFF429 at 466.081 kb on - strand, within GFF429 at 466.081 kb on - strand, within GFF429 at 466.081 kb on - strand, within GFF429 at 466.155 kb on + strand, within GFF429 at 466.156 kb on - strand, within GFF429 at 466.260 kb on + strand, within GFF429 at 466.260 kb on + strand, within GFF429 at 466.260 kb on + strand, within GFF429 at 466.261 kb on - strand, within GFF429 at 466.577 kb on - strand, within GFF429 at 466.577 kb on - strand, within GFF429 at 466.623 kb on + strand, within GFF429 at 466.623 kb on + strand, within GFF429 at 466.623 kb on + strand, within GFF429 at 466.623 kb on + strand, within GFF429 at 466.623 kb on + strand, within GFF429 at 466.623 kb on + strand, within GFF429 at 466.623 kb on + strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.624 kb on - strand, within GFF429 at 466.701 kb on + strand, within GFF429 at 466.701 kb on + strand, within GFF429 at 466.701 kb on + strand, within GFF429 at 466.702 kb on - strand, within GFF429 at 466.702 kb on - strand, within GFF429 at 466.702 kb on - strand, within GFF429 at 466.755 kb on + strand, within GFF429 at 466.755 kb on + strand, within GFF429 at 466.755 kb on + strand, within GFF429 at 466.755 kb on + strand, within GFF429 at 466.755 kb on + strand, within GFF429 at 466.755 kb on + strand, within GFF429 at 466.756 kb on - strand, within GFF429 at 466.953 kb on + strand, within GFF429 at 466.953 kb on + strand, within GFF429 at 466.954 kb on - strand, within GFF429 at 467.058 kb on + strand, within GFF429 at 467.058 kb on + strand, within GFF429 at 467.058 kb on + strand, within GFF429 at 467.058 kb on + strand, within GFF429 at 467.058 kb on + strand, within GFF429 at 467.058 kb on + strand, within GFF429 at 467.058 kb on + strand, within GFF429 at 467.059 kb on - strand, within GFF429 at 467.059 kb on - strand, within GFF429 at 467.059 kb on - strand, within GFF429 at 467.215 kb on + strand, within GFF429 at 467.215 kb on + strand, within GFF429 at 467.216 kb on - strand, within GFF429 at 467.370 kb on + strand, within GFF429 at 467.371 kb on - strand, within GFF429 at 467.371 kb on - strand, within GFF429 at 467.383 kb on - strand, within GFF429 at 467.526 kb on + strand, within GFF429 at 467.527 kb on - strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.884 kb on - strand, within GFF429 at 467.884 kb on - strand, within GFF429 at 467.884 kb on - strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.907 kb on + strand, within GFF429 at 467.907 kb on + strand, within GFF429 at 467.908 kb on - strand, within GFF429 at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.207 kb on + strand at 468.208 kb on - strand at 468.291 kb on - strand at 468.302 kb on + strand at 468.302 kb on + strand at 468.303 kb on - strand at 468.303 kb on - strand at 468.303 kb on - strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.511 kb on - strand at 468.511 kb on - strand at 468.511 kb on - strand at 468.601 kb on + strand, within GFF430 at 468.601 kb on + strand, within GFF430 at 468.602 kb on - strand, within GFF430 at 468.602 kb on - strand, within GFF430 at 468.602 kb on - strand, within GFF430 at 468.643 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 469.088 kb on - strand, within GFF430 at 469.088 kb on - strand, within GFF430
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 464,430 + GFF428 0.57 -0.2 464,430 + GFF428 0.57 -0.7 464,490 + GFF428 0.61 +0.5 464,490 + GFF428 0.61 +0.9 464,490 + GFF428 0.61 +0.1 464,490 + GFF428 0.61 -1.5 464,490 + GFF428 0.61 -0.3 464,490 + GFF428 0.61 +0.6 464,491 - GFF428 0.61 -2.7 464,491 - GFF428 0.61 -0.0 464,491 - GFF428 0.61 -1.9 464,491 - GFF428 0.61 -0.4 464,604 + GFF428 0.69 -3.6 464,613 + GFF428 0.69 +1.3 464,613 + GFF428 0.69 +0.1 465,261 + +1.8 465,261 + -0.5 465,261 + +0.0 465,261 + +1.1 465,261 + -1.6 465,261 + +0.3 465,261 + -0.8 465,262 - +1.1 465,262 - +0.8 465,262 - -1.0 465,262 - -0.7 465,650 + GFF429 0.17 +1.4 465,650 + GFF429 0.17 +0.3 465,650 + GFF429 0.17 +0.0 465,650 + GFF429 0.17 -2.0 465,651 - GFF429 0.17 -0.3 465,651 - GFF429 0.17 +0.8 465,651 - GFF429 0.17 -0.7 465,651 - GFF429 0.17 -2.9 465,651 - GFF429 0.17 -1.7 465,660 + GFF429 0.17 -1.0 465,660 + GFF429 0.17 -0.6 465,661 - GFF429 0.17 +2.0 465,661 - GFF429 0.17 +2.4 465,661 - GFF429 0.17 +0.3 465,744 + GFF429 0.20 -0.2 465,744 + GFF429 0.20 +0.6 465,744 + GFF429 0.20 -0.2 465,745 - GFF429 0.20 -0.2 465,745 - GFF429 0.20 -1.9 465,745 - GFF429 0.20 -2.6 465,745 - GFF429 0.20 +0.7 465,745 - GFF429 0.20 -0.4 465,835 - GFF429 0.23 +1.4 465,873 + GFF429 0.24 +0.5 465,873 + GFF429 0.24 +1.2 465,882 + GFF429 0.24 +4.8 465,882 + GFF429 0.24 +0.3 465,882 + GFF429 0.24 +0.3 465,882 + GFF429 0.24 -2.4 465,883 - GFF429 0.24 -0.5 465,883 - GFF429 0.24 -1.2 465,883 - GFF429 0.24 -0.3 465,883 - GFF429 0.24 -1.0 465,883 - GFF429 0.24 -1.0 466,002 + GFF429 0.28 -2.3 466,032 + GFF429 0.29 -1.6 466,032 + GFF429 0.29 -0.8 466,032 + GFF429 0.29 -1.5 466,032 + GFF429 0.29 +1.8 466,033 - GFF429 0.29 -1.3 466,033 - GFF429 0.29 +0.8 466,033 - GFF429 0.29 -0.5 466,033 - GFF429 0.29 -2.0 466,065 + GFF429 0.30 -0.0 466,065 + GFF429 0.30 +1.4 466,066 - GFF429 0.30 -0.5 466,066 - GFF429 0.30 -2.7 466,080 + GFF429 0.30 +0.7 466,080 + GFF429 0.30 -0.7 466,080 + GFF429 0.30 +1.4 466,080 + GFF429 0.30 +1.3 466,081 - GFF429 0.30 +0.6 466,081 - GFF429 0.30 -1.5 466,081 - GFF429 0.30 -2.5 466,081 - GFF429 0.30 +1.2 466,081 - GFF429 0.30 -3.1 466,155 + GFF429 0.33 +0.5 466,156 - GFF429 0.33 -0.7 466,260 + GFF429 0.36 +0.2 466,260 + GFF429 0.36 -2.9 466,260 + GFF429 0.36 +0.3 466,261 - GFF429 0.36 +0.1 466,577 - GFF429 0.46 -0.3 466,577 - GFF429 0.46 -0.7 466,623 + GFF429 0.47 +3.2 466,623 + GFF429 0.47 +1.0 466,623 + GFF429 0.47 +1.5 466,623 + GFF429 0.47 -0.4 466,623 + GFF429 0.47 +0.4 466,623 + GFF429 0.47 +0.7 466,623 + GFF429 0.47 -2.5 466,624 - GFF429 0.47 -2.7 466,624 - GFF429 0.47 +0.3 466,624 - GFF429 0.47 +0.1 466,624 - GFF429 0.47 -2.1 466,624 - GFF429 0.47 +0.3 466,624 - GFF429 0.47 -1.2 466,624 - GFF429 0.47 -3.1 466,624 - GFF429 0.47 +0.2 466,701 + GFF429 0.49 -1.2 466,701 + GFF429 0.49 +0.9 466,701 + GFF429 0.49 -0.2 466,702 - GFF429 0.49 -0.4 466,702 - GFF429 0.49 +0.1 466,702 - GFF429 0.49 -2.7 466,755 + GFF429 0.51 -0.5 466,755 + GFF429 0.51 +0.3 466,755 + GFF429 0.51 +4.5 466,755 + GFF429 0.51 -0.1 466,755 + GFF429 0.51 +0.3 466,755 + GFF429 0.51 +0.3 466,756 - GFF429 0.51 -0.9 466,953 + GFF429 0.57 +0.1 466,953 + GFF429 0.57 -0.1 466,954 - GFF429 0.57 +0.6 467,058 + GFF429 0.60 +1.4 467,058 + GFF429 0.60 -2.7 467,058 + GFF429 0.60 -2.1 467,058 + GFF429 0.60 -1.3 467,058 + GFF429 0.60 -2.3 467,058 + GFF429 0.60 +1.5 467,058 + GFF429 0.60 -0.7 467,059 - GFF429 0.60 -0.9 467,059 - GFF429 0.60 -0.5 467,059 - GFF429 0.60 -2.7 467,215 + GFF429 0.65 -2.1 467,215 + GFF429 0.65 +0.0 467,216 - GFF429 0.65 -1.2 467,370 + GFF429 0.70 -1.2 467,371 - GFF429 0.70 -0.3 467,371 - GFF429 0.70 -2.0 467,383 - GFF429 0.70 +0.6 467,526 + GFF429 0.75 -1.0 467,527 - GFF429 0.75 -2.3 467,883 + GFF429 0.85 +0.4 467,883 + GFF429 0.85 -0.2 467,883 + GFF429 0.85 +1.6 467,883 + GFF429 0.85 +2.1 467,884 - GFF429 0.85 -2.6 467,884 - GFF429 0.85 -0.5 467,884 - GFF429 0.85 -1.7 467,895 + GFF429 0.86 +1.2 467,895 + GFF429 0.86 -1.7 467,895 + GFF429 0.86 +0.0 467,895 + GFF429 0.86 -1.5 467,895 + GFF429 0.86 -2.2 467,895 + GFF429 0.86 +0.1 467,895 + GFF429 0.86 -3.6 467,895 + GFF429 0.86 +0.8 467,895 + GFF429 0.86 -1.1 467,895 + GFF429 0.86 +1.9 467,896 - GFF429 0.86 -2.5 467,896 - GFF429 0.86 +0.3 467,896 - GFF429 0.86 -0.5 467,896 - GFF429 0.86 -0.0 467,896 - GFF429 0.86 -0.8 467,896 - GFF429 0.86 -0.2 467,896 - GFF429 0.86 +0.6 467,896 - GFF429 0.86 -2.1 467,896 - GFF429 0.86 -0.2 467,896 - GFF429 0.86 +1.2 467,896 - GFF429 0.86 +0.3 467,896 - GFF429 0.86 +0.9 467,907 + GFF429 0.86 -2.1 467,907 + GFF429 0.86 -3.2 467,908 - GFF429 0.86 +0.4 468,123 + -0.9 468,123 + +0.8 468,123 + -1.6 468,123 + +0.6 468,123 + +0.6 468,123 + -1.0 468,123 + -0.5 468,123 + -1.4 468,123 + +0.9 468,123 + +1.6 468,123 + -0.3 468,123 + +1.3 468,123 + +0.8 468,123 + +0.3 468,123 + -0.1 468,123 + +0.2 468,123 + -2.4 468,123 + -1.5 468,123 + +2.2 468,123 + -0.2 468,124 - +0.5 468,124 - +2.3 468,124 - -1.4 468,124 - +3.4 468,124 - -0.7 468,124 - -2.2 468,124 - +0.9 468,124 - -0.5 468,124 - -0.5 468,124 - +1.2 468,124 - -0.7 468,124 - +0.6 468,124 - -1.5 468,207 + +0.3 468,208 - -1.6 468,291 - -1.3 468,302 + +1.1 468,302 + -1.5 468,303 - -2.2 468,303 - -0.9 468,303 - -2.3 468,510 + -2.6 468,510 + -2.7 468,510 + -2.5 468,510 + +0.8 468,510 + +0.1 468,510 + +0.3 468,511 - -1.0 468,511 - -0.4 468,511 - -0.7 468,601 + GFF430 0.16 -0.2 468,601 + GFF430 0.16 -0.2 468,602 - GFF430 0.16 +0.6 468,602 - GFF430 0.16 +0.4 468,602 - GFF430 0.16 -1.3 468,643 + GFF430 0.20 -1.4 468,964 + GFF430 0.45 -1.2 468,964 + GFF430 0.45 +0.1 468,964 + GFF430 0.45 -1.3 468,964 + GFF430 0.45 -1.9 468,964 + GFF430 0.45 -1.0 468,964 + GFF430 0.45 +0.6 468,964 + GFF430 0.45 +1.1 468,964 + GFF430 0.45 -0.6 468,965 - GFF430 0.45 -0.7 468,965 - GFF430 0.45 +0.4 468,965 - GFF430 0.45 -2.0 468,965 - GFF430 0.45 +0.8 468,965 - GFF430 0.45 +0.1 469,088 - GFF430 0.55 +0.7 469,088 - GFF430 0.55 -0.2
Or see this region's nucleotide sequence