Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4284 and GFF4285 are separated by 2 nucleotides GFF4285 and GFF4286 are separated by 74 nucleotides
GFF4284 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 203,720 to 205,303
GFF4284
GFF4285 - Tricarboxylate transport protein TctC, at 205,306 to 206,241
GFF4285
GFF4286 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 206,316 to 207,236
GFF4286
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.603 kb on + strand, within GFF4284 at 204.604 kb on - strand, within GFF4284 at 204.660 kb on + strand, within GFF4284 at 204.661 kb on - strand, within GFF4284 at 204.681 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 205.017 kb on + strand, within GFF4284 at 205.017 kb on + strand, within GFF4284 at 205.206 kb on + strand at 205.294 kb on + strand at 205.295 kb on - strand at 205.811 kb on + strand, within GFF4285 at 205.811 kb on + strand, within GFF4285 at 205.812 kb on - strand, within GFF4285 at 205.926 kb on - strand, within GFF4285 at 206.364 kb on + strand at 206.737 kb on + strand, within GFF4286 at 206.833 kb on + strand, within GFF4286
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 204,603 + GFF4284 0.56 +0.5 204,604 - GFF4284 0.56 -1.5 204,660 + GFF4284 0.59 +0.2 204,661 - GFF4284 0.59 +2.4 204,681 + GFF4284 0.61 -0.1 204,810 + GFF4284 0.69 +1.2 204,810 + GFF4284 0.69 +0.8 204,810 + GFF4284 0.69 -1.6 204,811 - GFF4284 0.69 -0.1 204,811 - GFF4284 0.69 +2.2 204,811 - GFF4284 0.69 -2.6 205,017 + GFF4284 0.82 -1.8 205,017 + GFF4284 0.82 -2.9 205,206 + +0.2 205,294 + -0.5 205,295 - -2.5 205,811 + GFF4285 0.54 -0.4 205,811 + GFF4285 0.54 +0.2 205,812 - GFF4285 0.54 -1.5 205,926 - GFF4285 0.66 -0.6 206,364 + -1.5 206,737 + GFF4286 0.46 -1.9 206,833 + GFF4286 0.56 -0.6
Or see this region's nucleotide sequence