Strain Fitness in Variovorax sp. SCN45 around GFF4252

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4250 and GFF4251 are separated by 102 nucleotidesGFF4251 and GFF4252 are separated by 81 nucleotidesGFF4252 and GFF4253 are separated by 132 nucleotides GFF4250 - Transcriptional regulator, AcrR family, at 165,567 to 166,118 GFF4250 GFF4251 - no description, at 166,221 to 166,895 GFF4251 GFF4252 - hypothetical protein, at 166,977 to 168,728 GFF4252 GFF4253 - hypothetical protein, at 168,861 to 169,838 GFF4253 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 166.238 kb on + strandat 166.238 kb on + strandat 166.238 kb on + strandat 166.239 kb on - strandat 166.239 kb on - strandat 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.620 kb on + strand, within GFF4251at 166.620 kb on + strand, within GFF4251at 166.621 kb on - strand, within GFF4251at 166.621 kb on - strand, within GFF4251at 166.773 kb on + strand, within GFF4251at 166.774 kb on - strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.786 kb on - strand, within GFF4251at 166.786 kb on - strand, within GFF4251at 166.893 kb on + strandat 166.893 kb on + strandat 166.894 kb on - strandat 167.044 kb on + strandat 167.044 kb on + strandat 167.045 kb on - strandat 167.045 kb on - strandat 167.101 kb on + strandat 167.101 kb on + strandat 167.101 kb on + strandat 167.102 kb on - strandat 167.102 kb on - strandat 167.360 kb on + strand, within GFF4252at 167.360 kb on + strand, within GFF4252at 167.361 kb on - strand, within GFF4252at 167.361 kb on - strand, within GFF4252at 167.361 kb on - strand, within GFF4252at 167.389 kb on + strand, within GFF4252at 167.390 kb on - strand, within GFF4252at 167.390 kb on - strand, within GFF4252at 167.465 kb on + strand, within GFF4252at 167.466 kb on - strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.578 kb on + strand, within GFF4252at 167.636 kb on - strand, within GFF4252at 167.636 kb on - strand, within GFF4252at 167.697 kb on - strand, within GFF4252at 167.697 kb on - strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.773 kb on + strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.774 kb on - strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.775 kb on + strand, within GFF4252at 167.776 kb on - strand, within GFF4252at 167.776 kb on - strand, within GFF4252at 167.776 kb on - strand, within GFF4252at 167.891 kb on - strand, within GFF4252at 167.891 kb on - strand, within GFF4252at 167.935 kb on + strand, within GFF4252at 167.936 kb on - strand, within GFF4252at 168.037 kb on + strand, within GFF4252at 168.037 kb on + strand, within GFF4252at 168.037 kb on + strand, within GFF4252at 168.038 kb on - strand, within GFF4252at 168.038 kb on - strand, within GFF4252at 168.038 kb on - strand, within GFF4252at 168.038 kb on - strand, within GFF4252at 168.038 kb on - strand, within GFF4252at 168.038 kb on - strand, within GFF4252at 168.038 kb on - strand, within GFF4252at 168.071 kb on - strand, within GFF4252at 168.219 kb on + strand, within GFF4252at 168.219 kb on + strand, within GFF4252at 168.219 kb on + strand, within GFF4252at 168.220 kb on - strand, within GFF4252at 168.220 kb on - strand, within GFF4252at 168.220 kb on - strand, within GFF4252at 168.326 kb on - strand, within GFF4252at 168.740 kb on + strandat 168.741 kb on - strandat 168.741 kb on - strandat 168.780 kb on - strandat 168.780 kb on - strandat 168.780 kb on - strandat 168.780 kb on - strandat 168.780 kb on - strandat 168.780 kb on - strandat 169.191 kb on + strand, within GFF4253at 169.192 kb on - strand, within GFF4253at 169.192 kb on - strand, within GFF4253at 169.192 kb on - strand, within GFF4253at 169.233 kb on + strand, within GFF4253at 169.233 kb on + strand, within GFF4253at 169.234 kb on - strand, within GFF4253at 169.234 kb on - strand, within GFF4253at 169.234 kb on - strand, within GFF4253at 169.242 kb on + strand, within GFF4253at 169.596 kb on + strand, within GFF4253at 169.597 kb on - strand, within GFF4253at 169.597 kb on - strand, within GFF4253

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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165,994 + GFF4250 0.77 -1.2
165,994 + GFF4250 0.77 +0.5
165,994 + GFF4250 0.77 -1.5
165,994 + GFF4250 0.77 -0.4
165,994 + GFF4250 0.77 -0.6
165,994 + GFF4250 0.77 +0.2
165,995 - GFF4250 0.78 -0.4
165,995 - GFF4250 0.78 -0.1
165,995 - GFF4250 0.78 -2.8
166,238 + -2.3
166,238 + +2.0
166,238 + -0.5
166,239 - -1.3
166,239 - -0.1
166,437 + GFF4251 0.32 +0.8
166,437 + GFF4251 0.32 +1.1
166,437 + GFF4251 0.32 +0.2
166,437 + GFF4251 0.32 +0.0
166,438 - GFF4251 0.32 -2.9
166,438 - GFF4251 0.32 -1.8
166,438 - GFF4251 0.32 -2.1
166,438 - GFF4251 0.32 -1.2
166,438 - GFF4251 0.32 +0.6
166,438 - GFF4251 0.32 +0.4
166,438 - GFF4251 0.32 +0.7
166,620 + GFF4251 0.59 +1.5
166,620 + GFF4251 0.59 +0.1
166,621 - GFF4251 0.59 -0.8
166,621 - GFF4251 0.59 -0.2
166,773 + GFF4251 0.82 +1.6
166,774 - GFF4251 0.82 -2.1
166,785 + GFF4251 0.84 -1.6
166,785 + GFF4251 0.84 +3.2
166,785 + GFF4251 0.84 -0.4
166,785 + GFF4251 0.84 -0.4
166,785 + GFF4251 0.84 +0.1
166,786 - GFF4251 0.84 -0.0
166,786 - GFF4251 0.84 -0.4
166,893 + -1.2
166,893 + -0.9
166,894 - +0.9
167,044 + -0.4
167,044 + +0.5
167,045 - +1.7
167,045 - +0.8
167,101 + -0.2
167,101 + +1.2
167,101 + -0.2
167,102 - -1.4
167,102 - -1.7
167,360 + GFF4252 0.22 -0.8
167,360 + GFF4252 0.22 +2.8
167,361 - GFF4252 0.22 +1.5
167,361 - GFF4252 0.22 -1.0
167,361 - GFF4252 0.22 -2.2
167,389 + GFF4252 0.24 -2.6
167,390 - GFF4252 0.24 -1.1
167,390 - GFF4252 0.24 -0.4
167,465 + GFF4252 0.28 -1.1
167,466 - GFF4252 0.28 -1.5
167,578 + GFF4252 0.34 +0.2
167,578 + GFF4252 0.34 -1.6
167,578 + GFF4252 0.34 -1.0
167,578 + GFF4252 0.34 -0.4
167,636 - GFF4252 0.38 +0.4
167,636 - GFF4252 0.38 +0.8
167,697 - GFF4252 0.41 +0.7
167,697 - GFF4252 0.41 -0.8
167,773 + GFF4252 0.45 +0.9
167,773 + GFF4252 0.45 -2.8
167,773 + GFF4252 0.45 +1.2
167,773 + GFF4252 0.45 -0.4
167,773 + GFF4252 0.45 -0.8
167,773 + GFF4252 0.45 +0.1
167,773 + GFF4252 0.45 +1.3
167,773 + GFF4252 0.45 -0.6
167,773 + GFF4252 0.45 +0.3
167,773 + GFF4252 0.45 +1.7
167,774 - GFF4252 0.45 -0.4
167,774 - GFF4252 0.45 -2.0
167,774 - GFF4252 0.45 +2.1
167,774 - GFF4252 0.45 -2.0
167,774 - GFF4252 0.45 +0.8
167,774 - GFF4252 0.45 -0.8
167,775 + GFF4252 0.46 -0.2
167,775 + GFF4252 0.46 -0.8
167,775 + GFF4252 0.46 -0.2
167,775 + GFF4252 0.46 -1.8
167,776 - GFF4252 0.46 -1.9
167,776 - GFF4252 0.46 -0.0
167,776 - GFF4252 0.46 +0.2
167,891 - GFF4252 0.52 +0.5
167,891 - GFF4252 0.52 +0.4
167,935 + GFF4252 0.55 -0.1
167,936 - GFF4252 0.55 +0.9
168,037 + GFF4252 0.61 +1.5
168,037 + GFF4252 0.61 -1.4
168,037 + GFF4252 0.61 -0.6
168,038 - GFF4252 0.61 -1.9
168,038 - GFF4252 0.61 -0.6
168,038 - GFF4252 0.61 -1.9
168,038 - GFF4252 0.61 -0.9
168,038 - GFF4252 0.61 -0.9
168,038 - GFF4252 0.61 -2.9
168,038 - GFF4252 0.61 +0.2
168,071 - GFF4252 0.62 +0.4
168,219 + GFF4252 0.71 -0.9
168,219 + GFF4252 0.71 +0.6
168,219 + GFF4252 0.71 -0.8
168,220 - GFF4252 0.71 -0.9
168,220 - GFF4252 0.71 -1.4
168,220 - GFF4252 0.71 +0.1
168,326 - GFF4252 0.77 -0.8
168,740 + -1.7
168,741 - -2.4
168,741 - -0.9
168,780 - -1.1
168,780 - -0.6
168,780 - +0.3
168,780 - -1.1
168,780 - -0.8
168,780 - -0.2
169,191 + GFF4253 0.34 -1.7
169,192 - GFF4253 0.34 +0.5
169,192 - GFF4253 0.34 +1.5
169,192 - GFF4253 0.34 -0.1
169,233 + GFF4253 0.38 -3.0
169,233 + GFF4253 0.38 +3.0
169,234 - GFF4253 0.38 -2.3
169,234 - GFF4253 0.38 -0.4
169,234 - GFF4253 0.38 +1.1
169,242 + GFF4253 0.39 -1.7
169,596 + GFF4253 0.75 -2.2
169,597 - GFF4253 0.75 -2.6
169,597 - GFF4253 0.75 +0.9

Or see this region's nucleotide sequence