Strain Fitness in Variovorax sp. SCN45 around GFF4184

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
88,448	+		GFF4183	0.56	+0.2
88,605	+		GFF4183	0.71	-1.2
88,606	-		GFF4183	0.72	+0.6
88,729	-		GFF4183	0.84	+0.7
89,153	-				+0.6
89,874	-				-0.1
89,874	-				+0.8
89,877	+				-1.3
89,877	+				+0.9
89,878	-				-0.7
89,878	-				-0.8
89,878	-				-0.9
90,036	-				-1.5
90,683	+		GFF4184	0.12	-2.1
90,683	+		GFF4184	0.12	+0.2
90,684	-		GFF4184	0.12	+1.0
90,684	-		GFF4184	0.12	-1.2
90,852	+		GFF4184	0.13	+0.5
90,872	+		GFF4184	0.13	+1.5
90,873	-		GFF4184	0.13	+0.4
90,873	-		GFF4184	0.13	+0.8
90,873	-		GFF4184	0.13	-1.2
91,065	+		GFF4184	0.15	-0.4
91,066	-		GFF4184	0.15	+2.0
91,066	-		GFF4184	0.15	-0.2
91,066	-		GFF4184	0.15	-2.7
91,066	-		GFF4184	0.15	-1.9
91,078	-		GFF4184	0.15	-2.7
91,131	+		GFF4184	0.15	+0.7
91,131	+		GFF4184	0.15	+0.6
91,132	-		GFF4184	0.15	-1.5
91,132	-		GFF4184	0.15	+0.7
91,134	+		GFF4184	0.15	+0.6
91,134	+		GFF4184	0.15	+0.5
91,134	+		GFF4184	0.15	-0.7
91,134	+		GFF4184	0.15	+1.2
91,135	-		GFF4184	0.15	-0.7
91,135	-		GFF4184	0.15	-0.4
91,135	-		GFF4184	0.15	-0.9
91,135	-		GFF4184	0.15	-0.0
91,178	+		GFF4184	0.16	-0.7
91,179	-		GFF4184	0.16	-1.1
91,179	-		GFF4184	0.16	+0.5
91,179	-		GFF4184	0.16	+1.4
91,257	+		GFF4184	0.16	-1.1
91,258	-		GFF4184	0.16	-0.8
91,305	+		GFF4184	0.17	-1.9
91,359	+		GFF4184	0.17	+0.8
91,359	+		GFF4184	0.17	-2.3
91,360	-		GFF4184	0.17	+0.2
91,360	-		GFF4184	0.17	-1.2
91,371	+		GFF4184	0.17	-1.5
91,372	-		GFF4184	0.17	+0.6
91,372	-		GFF4184	0.17	-0.4
91,715	+		GFF4184	0.20	-1.4
92,209	-		GFF4184	0.23	+2.1
92,209	-		GFF4184	0.23	+1.4
92,245	-		GFF4184	0.24	-0.9
92,316	+		GFF4184	0.24	-2.7
92,317	-		GFF4184	0.24	+0.8
92,317	-		GFF4184	0.24	-0.9
92,362	-		GFF4184	0.25	-1.7
92,406	+		GFF4184	0.25	+0.3
92,407	-		GFF4184	0.25	-0.8
92,407	-		GFF4184	0.25	-0.1
92,482	-		GFF4184	0.26	+1.0
92,493	+		GFF4184	0.26	-0.3
92,493	+		GFF4184	0.26	+1.3
92,494	-		GFF4184	0.26	+0.1
92,494	-		GFF4184	0.26	-0.4
92,820	+		GFF4184	0.28	-3.1
93,245	+		GFF4184	0.31	-1.1
93,246	-		GFF4184	0.31	+0.4
93,345	+		GFF4184	0.32	-0.4
93,346	-		GFF4184	0.32	-0.8
93,346	-		GFF4184	0.32	-0.6
93,346	-		GFF4184	0.32	-0.9
93,346	-		GFF4184	0.32	-2.7
93,421	-		GFF4184	0.33	-0.8
93,504	+		GFF4184	0.33	-2.1
93,504	+		GFF4184	0.33	-1.6
93,505	-		GFF4184	0.33	-0.1
93,505	-		GFF4184	0.33	-1.2
93,505	-		GFF4184	0.33	+0.1
93,505	-		GFF4184	0.33	-0.8
93,601	-		GFF4184	0.34	-2.7
93,606	+		GFF4184	0.34	-0.5
93,606	+		GFF4184	0.34	-0.6
93,663	+		GFF4184	0.34	-2.2
93,663	+		GFF4184	0.34	-0.3
93,663	+		GFF4184	0.34	-2.8
93,664	-		GFF4184	0.34	-1.8
93,664	-		GFF4184	0.34	-0.9
93,664	-		GFF4184	0.34	-2.0
93,729	+		GFF4184	0.35	+0.1
93,730	-		GFF4184	0.35	+0.2
93,795	+		GFF4184	0.35	+0.2
93,795	+		GFF4184	0.35	+1.2
93,796	-		GFF4184	0.35	+2.2
93,796	-		GFF4184	0.35	+0.0
93,796	-		GFF4184	0.35	-0.8
93,796	-		GFF4184	0.35	-1.2
93,796	-		GFF4184	0.35	+0.5
93,796	-		GFF4184	0.35	-2.8
93,796	-		GFF4184	0.35	+0.1
93,796	-		GFF4184	0.35	-0.3
93,839	+		GFF4184	0.36	+1.2
93,839	+		GFF4184	0.36	+0.6
93,839	+		GFF4184	0.36	+2.8
93,840	-		GFF4184	0.36	-2.6
93,975	+		GFF4184	0.37	+1.8
93,975	+		GFF4184	0.37	-2.2
93,975	+		GFF4184	0.37	-1.2
93,976	-		GFF4184	0.37	+0.3
93,976	-		GFF4184	0.37	+1.8
93,976	-		GFF4184	0.37	-0.1
93,976	-		GFF4184	0.37	+0.2
93,976	-		GFF4184	0.37	-0.8
94,125	+		GFF4184	0.38	-0.4
94,181	+		GFF4184	0.38	+0.6
94,182	-		GFF4184	0.38	-0.4
94,185	+		GFF4184	0.38	-0.4
94,185	+		GFF4184	0.38	+0.2
94,186	-		GFF4184	0.38	-0.0
94,186	-		GFF4184	0.38	+0.7
94,458	+		GFF4184	0.40	+1.5
94,458	+		GFF4184	0.40	+0.6
94,458	+		GFF4184	0.40	+0.4
94,458	+		GFF4184	0.40	-0.6
94,458	+		GFF4184	0.40	+0.2
94,459	-		GFF4184	0.40	-4.0
94,459	-		GFF4184	0.40	-1.4
94,459	-		GFF4184	0.40	-0.8
94,459	-		GFF4184	0.40	-2.5
94,459	-		GFF4184	0.40	-2.2
94,699	-		GFF4184	0.42	+1.5
94,716	+		GFF4184	0.42	-1.9
94,716	+		GFF4184	0.42	+0.4
94,717	-		GFF4184	0.42	-2.1
94,729	-		GFF4184	0.42	+0.4
94,824	+		GFF4184	0.43	-0.5
94,824	+		GFF4184	0.43	-1.1
94,825	-		GFF4184	0.43	+1.3
94,825	-		GFF4184	0.43	+1.4
94,825	-		GFF4184	0.43	-0.7
94,825	-		GFF4184	0.43	+0.7
94,825	-		GFF4184	0.43	+1.2
94,825	-		GFF4184	0.43	-0.1
94,825	-		GFF4184	0.43	+1.1
94,825	-		GFF4184	0.43	-0.5
94,845	+		GFF4184	0.43	+1.2
94,845	+		GFF4184	0.43	-1.7
94,846	-		GFF4184	0.43	+0.2
95,035	-		GFF4184	0.45	-3.4
95,035	-		GFF4184	0.45	-1.5
95,043	+		GFF4184	0.45	-2.0
95,043	+		GFF4184	0.45	+1.1
95,043	+		GFF4184	0.45	+2.2
95,044	-		GFF4184	0.45	-1.6
95,058	+		GFF4184	0.45	-0.8
95,058	+		GFF4184	0.45	+1.2
95,058	+		GFF4184	0.45	-2.0
95,058	+		GFF4184	0.45	-3.1
95,058	+		GFF4184	0.45	-1.6
95,059	-		GFF4184	0.45	-0.9
95,214	+		GFF4184	0.46	-1.2
95,537	+		GFF4184	0.49	+0.2
95,537	+		GFF4184	0.49	+0.1
95,538	-		GFF4184	0.49	+1.2
95,581	-		GFF4184	0.49	+0.2
96,097	-		GFF4184	0.53	-0.1
96,366	+		GFF4184	0.55	-2.1
96,366	+		GFF4184	0.55	+0.1
96,366	+		GFF4184	0.55	+0.8
96,367	-		GFF4184	0.55	+0.4
96,403	-		GFF4184	0.55	-0.9
96,709	-		GFF4184	0.57	-2.1
96,918	+		GFF4184	0.59	-1.5
97,097	-		GFF4184	0.60	+2.2
97,156	+		GFF4184	0.61	+1.2
97,156	+		GFF4184	0.61	-2.4
97,157	-		GFF4184	0.61	-1.0
97,157	-		GFF4184	0.61	+0.6
97,536	+		GFF4184	0.64	+0.9
97,536	+		GFF4184	0.64	+1.2
97,536	+		GFF4184	0.64	-0.8
97,537	-		GFF4184	0.64	+2.2
97,537	-		GFF4184	0.64	-2.8
97,605	+		GFF4184	0.64	-2.5
97,605	+		GFF4184	0.64	-0.6
97,606	-		GFF4184	0.64	+0.2
97,606	-		GFF4184	0.64	-0.9
97,708	-		GFF4184	0.65	+0.2
97,810	-		GFF4184	0.66	-1.9
97,848	+		GFF4184	0.66	-1.2
97,848	+		GFF4184	0.66	+1.2
97,848	+		GFF4184	0.66	-0.6
97,848	+		GFF4184	0.66	+0.6
97,848	+		GFF4184	0.66	-1.8
97,848	+		GFF4184	0.66	+0.0
97,848	+		GFF4184	0.66	+1.2
97,848	+		GFF4184	0.66	-1.1
97,849	-		GFF4184	0.66	+0.4
97,849	-		GFF4184	0.66	-1.1
97,972	+		GFF4184	0.67	+0.4
97,973	-		GFF4184	0.67	-0.9
98,070	+		GFF4184	0.68	+0.1
98,070	+		GFF4184	0.68	+0.5
98,430	+		GFF4184	0.70	-2.1
98,430	+		GFF4184	0.70	-1.2
98,431	-		GFF4184	0.70	+1.5
98,431	-		GFF4184	0.70	-0.6
98,766	+		GFF4184	0.73	-0.8
98,952	+		GFF4184	0.74	-1.2
98,953	-		GFF4184	0.74	-1.2
98,953	-		GFF4184	0.74	-1.1
99,145	-		GFF4184	0.76	+1.1
99,145	-		GFF4184	0.76	-0.1
99,145	-		GFF4184	0.76	-0.1
99,195	+		GFF4184	0.76	+0.2
99,195	+		GFF4184	0.76	+1.6
99,196	-		GFF4184	0.76	-0.1
99,196	-		GFF4184	0.76	+0.4
99,196	-		GFF4184	0.76	-0.3
99,300	+		GFF4184	0.77	-1.5
99,300	+		GFF4184	0.77	-0.1
99,301	-		GFF4184	0.77	+0.5
99,301	-		GFF4184	0.77	-2.2
99,313	-		GFF4184	0.77	-3.8
99,313	-		GFF4184	0.77	+0.9
99,498	+		GFF4184	0.78	-0.5
99,498	+		GFF4184	0.78	-1.5
99,498	+		GFF4184	0.78	-0.5
99,498	+		GFF4184	0.78	-0.1
99,498	+		GFF4184	0.78	-0.5
99,498	+		GFF4184	0.78	-0.6
99,499	-		GFF4184	0.78	-0.9
99,499	-		GFF4184	0.78	+2.8
99,499	-		GFF4184	0.78	+2.2
99,499	-		GFF4184	0.78	+1.0
99,499	-		GFF4184	0.78	-1.8
99,499	-		GFF4184	0.78	+0.1
99,499	-		GFF4184	0.78	-1.7
99,540	+		GFF4184	0.79	+0.1
99,540	+		GFF4184	0.79	+1.4
99,541	-		GFF4184	0.79	+0.5
99,930	+		GFF4184	0.82	-0.5
99,930	+		GFF4184	0.82	-1.4
99,930	+		GFF4184	0.82	-0.2
99,975	+		GFF4184	0.82	-0.8
99,975	+		GFF4184	0.82	-0.6
100,272	+		GFF4184	0.84	-0.4
100,344	+		GFF4184	0.85	+1.5
100,344	+		GFF4184	0.85	-0.8
100,345	-		GFF4184	0.85	-0.4
100,345	-		GFF4184	0.85	+0.6
100,345	-		GFF4184	0.85	-0.4
100,692	+		GFF4184	0.87	+2.2
100,777	-		GFF4184	0.88	+0.2
101,166	+				+1.2
101,167	-				-0.2
101,239	-				+0.1
101,239	-				+0.8
101,239	-				-1.9
101,395	-				-0.6
101,427	+				-0.9
101,427	+				-0.1
101,427	+				-0.7
101,428	-				+0.5
101,428	-				-0.4
101,502	+				-1.1
101,502	+				-0.8
101,502	+				+0.2
101,502	+				-2.2
101,502	+				-1.3
101,502	+				-1.8
101,502	+				-0.9
101,502	+				-1.4
101,502	+				-0.1
101,502	+				-0.8
101,502	+				-1.1
101,503	-				-0.8
101,503	-				+0.4
101,503	-				-2.2
101,503	-				+0.5
101,503	-				+1.2
101,503	-				-1.9
101,574	+				-1.1
101,574	+				+1.2
101,575	-				-0.5
101,575	-				+1.0
101,575	-				-2.1
101,770	-				-0.4
101,790	+				+1.7
101,790	+				-2.3
101,790	+				+4.9
101,791	-				-0.1
102,314	-				+2.7
102,478	+				-0.8
102,478	+				-1.2
102,479	-				-1.1
102,479	-				-0.5
102,507	-				+0.3
102,507	-				-1.9
102,602	+		GFF4185	0.18	+0.9
102,602	+		GFF4185	0.18	+0.6
102,728	+		GFF4185	0.38	-0.5
102,728	+		GFF4185	0.38	-0.9
102,728	+		GFF4185	0.38	+1.1
102,729	-		GFF4185	0.38	-0.4
102,729	-		GFF4185	0.38	-1.4
102,732	+		GFF4185	0.38	-1.9
102,732	+		GFF4185	0.38	-0.1
102,732	+		GFF4185	0.38	-0.9
102,733	-		GFF4185	0.39	-1.6
102,733	-		GFF4185	0.39	+1.2
102,733	-		GFF4185	0.39	-0.9
102,733	-		GFF4185	0.39	-3.4
102,733	-		GFF4185	0.39	+0.3
102,733	-		GFF4185	0.39	+1.1
102,733	-		GFF4185	0.39	-0.6
102,734	+		GFF4185	0.39	+1.4
102,735	-		GFF4185	0.39	-1.2
102,735	-		GFF4185	0.39	-1.0
102,981	-		GFF4185	0.78	-0.2
103,031	+		GFF4185	0.85	-0.4
103,031	+		GFF4185	0.85	+2.2