Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4167 and GFF4168 are separated by 1 nucleotides GFF4168 and GFF4169 overlap by 4 nucleotides GFF4169 and GFF4170 are separated by 19 nucleotides
GFF4167 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 71,498 to 73,120
GFF4167
GFF4168 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 73,122 to 73,937
GFF4168
GFF4169 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 73,934 to 74,878
GFF4169
GFF4170 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 74,898 to 76,454
GFF4170
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 73.453 kb on + strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.454 kb on - strand, within GFF4168 at 73.968 kb on + strand at 74.001 kb on + strand at 74.235 kb on + strand, within GFF4169 at 74.236 kb on - strand, within GFF4169 at 74.236 kb on - strand, within GFF4169 at 74.244 kb on + strand, within GFF4169 at 74.244 kb on + strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.245 kb on - strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.340 kb on + strand, within GFF4169 at 74.341 kb on - strand, within GFF4169 at 74.341 kb on - strand, within GFF4169 at 74.341 kb on - strand, within GFF4169 at 74.421 kb on + strand, within GFF4169 at 74.422 kb on - strand, within GFF4169 at 74.422 kb on - strand, within GFF4169 at 74.422 kb on - strand, within GFF4169 at 74.995 kb on + strand at 74.995 kb on + strand at 74.996 kb on - strand at 75.049 kb on - strand at 75.166 kb on + strand, within GFF4170 at 75.166 kb on + strand, within GFF4170 at 75.167 kb on - strand, within GFF4170 at 75.167 kb on - strand, within GFF4170 at 75.217 kb on + strand, within GFF4170 at 75.217 kb on + strand, within GFF4170 at 75.218 kb on - strand, within GFF4170 at 75.218 kb on - strand, within GFF4170 at 75.233 kb on - strand, within GFF4170 at 75.380 kb on - strand, within GFF4170 at 75.454 kb on + strand, within GFF4170 at 75.455 kb on - strand, within GFF4170 at 75.529 kb on + strand, within GFF4170
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 73,453 + GFF4168 0.41 +0.2 73,454 - GFF4168 0.41 -1.4 73,454 - GFF4168 0.41 -0.4 73,454 - GFF4168 0.41 -0.8 73,454 - GFF4168 0.41 -0.5 73,968 + +1.0 74,001 + -0.2 74,235 + GFF4169 0.32 -0.8 74,236 - GFF4169 0.32 -1.1 74,236 - GFF4169 0.32 -1.2 74,244 + GFF4169 0.33 +0.2 74,244 + GFF4169 0.33 +1.2 74,245 - GFF4169 0.33 -1.9 74,245 - GFF4169 0.33 -0.9 74,245 - GFF4169 0.33 -0.5 74,245 - GFF4169 0.33 +0.6 74,340 + GFF4169 0.43 -0.6 74,340 + GFF4169 0.43 +0.2 74,340 + GFF4169 0.43 -0.1 74,340 + GFF4169 0.43 +0.6 74,340 + GFF4169 0.43 +0.2 74,340 + GFF4169 0.43 -1.5 74,341 - GFF4169 0.43 +4.8 74,341 - GFF4169 0.43 -0.4 74,341 - GFF4169 0.43 -1.5 74,421 + GFF4169 0.52 +0.2 74,422 - GFF4169 0.52 +2.2 74,422 - GFF4169 0.52 -0.1 74,422 - GFF4169 0.52 +1.0 74,995 + -1.2 74,995 + -1.1 74,996 - +0.5 75,049 - +0.4 75,166 + GFF4170 0.17 +0.4 75,166 + GFF4170 0.17 -1.7 75,167 - GFF4170 0.17 +1.2 75,167 - GFF4170 0.17 -0.1 75,217 + GFF4170 0.20 -1.8 75,217 + GFF4170 0.20 +0.5 75,218 - GFF4170 0.21 -0.0 75,218 - GFF4170 0.21 -2.2 75,233 - GFF4170 0.22 -1.8 75,380 - GFF4170 0.31 -0.3 75,454 + GFF4170 0.36 +0.0 75,455 - GFF4170 0.36 -0.5 75,529 + GFF4170 0.41 -1.5
Or see this region's nucleotide sequence