Strain Fitness in Variovorax sp. SCN45 around GFF4100

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
80	+				+1.5
81	-				+1.1
152	-				+0.8
152	-				+0.1
152	-				-0.8
472	+		GFF4100	0.15	-2.4
473	-		GFF4100	0.15	-0.6
523	+		GFF4100	0.18	-1.4
602	-		GFF4100	0.23	-0.0
602	-		GFF4100	0.23	-1.1
889	+		GFF4100	0.41	+1.2
890	-		GFF4100	0.41	-2.8
890	-		GFF4100	0.41	-0.7
1,009	+		GFF4100	0.48	+0.3
1,195	+		GFF4100	0.60	-1.5
1,196	-		GFF4100	0.60	+0.4
1,213	+		GFF4100	0.61	-2.6
1,312	+		GFF4100	0.67	-2.4
1,313	-		GFF4100	0.67	-1.6
1,402	+		GFF4100	0.73	+0.3
1,402	+		GFF4100	0.73	-1.3
1,403	-		GFF4100	0.73	+1.3
1,403	-		GFF4100	0.73	-2.2
1,556	-		GFF4100	0.83	+2.0
1,618	+		GFF4100	0.86	-1.6
1,619	-		GFF4100	0.86	+0.4
2,714	+		GFF4101	0.48	+1.2
2,715	-		GFF4101	0.48	+0.4
2,715	-		GFF4101	0.48	-0.4