Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3768 and GFF3769 are separated by 17 nucleotides GFF3769 and GFF3770 are separated by 8 nucleotides
GFF3768 - no description, at 259,232 to 260,482
GFF3768
GFF3769 - FIG022979: MoxR-like ATPases, at 260,500 to 261,495
GFF3769
GFF3770 - hypothetical protein, at 261,504 to 262,868
GFF3770
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.550 kb on + strand, within GFF3768 at 259.550 kb on + strand, within GFF3768 at 259.550 kb on + strand, within GFF3768 at 259.550 kb on + strand, within GFF3768 at 259.551 kb on - strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.765 kb on + strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 259.766 kb on - strand, within GFF3768 at 260.261 kb on + strand, within GFF3768 at 260.261 kb on + strand, within GFF3768 at 260.713 kb on + strand, within GFF3769 at 260.917 kb on + strand, within GFF3769 at 260.917 kb on + strand, within GFF3769 at 260.917 kb on + strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 260.918 kb on - strand, within GFF3769 at 261.007 kb on + strand, within GFF3769 at 261.007 kb on + strand, within GFF3769 at 261.008 kb on - strand, within GFF3769 at 261.008 kb on - strand, within GFF3769 at 261.179 kb on + strand, within GFF3769 at 261.179 kb on + strand, within GFF3769 at 261.180 kb on - strand, within GFF3769 at 261.180 kb on - strand, within GFF3769 at 261.226 kb on + strand, within GFF3769 at 261.368 kb on + strand, within GFF3769 at 261.369 kb on - strand, within GFF3769 at 261.493 kb on + strand at 261.494 kb on - strand at 261.606 kb on + strand at 261.607 kb on - strand at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.758 kb on + strand, within GFF3770 at 261.759 kb on - strand, within GFF3770 at 261.759 kb on - strand, within GFF3770 at 261.891 kb on + strand, within GFF3770 at 261.892 kb on - strand, within GFF3770 at 262.041 kb on + strand, within GFF3770 at 262.041 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.092 kb on + strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.093 kb on - strand, within GFF3770 at 262.137 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.347 kb on + strand, within GFF3770 at 262.348 kb on - strand, within GFF3770 at 262.348 kb on - strand, within GFF3770 at 262.348 kb on - strand, within GFF3770 at 262.348 kb on - strand, within GFF3770
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 259,550 + GFF3768 0.25 +1.4 259,550 + GFF3768 0.25 +0.1 259,550 + GFF3768 0.25 -0.7 259,550 + GFF3768 0.25 +0.0 259,551 - GFF3768 0.25 +0.9 259,765 + GFF3768 0.43 -2.1 259,765 + GFF3768 0.43 +0.5 259,765 + GFF3768 0.43 +0.9 259,765 + GFF3768 0.43 -0.4 259,766 - GFF3768 0.43 +0.1 259,766 - GFF3768 0.43 -0.1 259,766 - GFF3768 0.43 +0.8 259,766 - GFF3768 0.43 -0.0 260,261 + GFF3768 0.82 -0.5 260,261 + GFF3768 0.82 -1.7 260,713 + GFF3769 0.21 -3.1 260,917 + GFF3769 0.42 +0.5 260,917 + GFF3769 0.42 -0.8 260,917 + GFF3769 0.42 -0.6 260,918 - GFF3769 0.42 +0.4 260,918 - GFF3769 0.42 +0.1 260,918 - GFF3769 0.42 +1.8 260,918 - GFF3769 0.42 -1.8 261,007 + GFF3769 0.51 -1.7 261,007 + GFF3769 0.51 +0.1 261,008 - GFF3769 0.51 -1.3 261,008 - GFF3769 0.51 +0.4 261,179 + GFF3769 0.68 -1.5 261,179 + GFF3769 0.68 -0.0 261,180 - GFF3769 0.68 -2.8 261,180 - GFF3769 0.68 -2.1 261,226 + GFF3769 0.73 -0.3 261,368 + GFF3769 0.87 +1.0 261,369 - GFF3769 0.87 -1.8 261,493 + -0.7 261,494 - -0.5 261,606 + +0.6 261,607 - -1.0 261,758 + GFF3770 0.19 -1.7 261,758 + GFF3770 0.19 -1.5 261,758 + GFF3770 0.19 +0.2 261,758 + GFF3770 0.19 +1.2 261,758 + GFF3770 0.19 +1.8 261,759 - GFF3770 0.19 +0.7 261,759 - GFF3770 0.19 +0.0 261,891 + GFF3770 0.28 +0.1 261,892 - GFF3770 0.28 -0.3 262,041 + GFF3770 0.39 -0.7 262,041 + GFF3770 0.39 -1.6 262,092 + GFF3770 0.43 -2.0 262,092 + GFF3770 0.43 -0.8 262,092 + GFF3770 0.43 -0.6 262,092 + GFF3770 0.43 -1.4 262,092 + GFF3770 0.43 +1.4 262,092 + GFF3770 0.43 +0.2 262,093 - GFF3770 0.43 +0.1 262,093 - GFF3770 0.43 -1.1 262,093 - GFF3770 0.43 +0.9 262,093 - GFF3770 0.43 +1.3 262,137 + GFF3770 0.46 +0.2 262,347 + GFF3770 0.62 +1.4 262,347 + GFF3770 0.62 -0.5 262,347 + GFF3770 0.62 -0.1 262,347 + GFF3770 0.62 -1.1 262,347 + GFF3770 0.62 +1.0 262,347 + GFF3770 0.62 +1.9 262,348 - GFF3770 0.62 -1.1 262,348 - GFF3770 0.62 +0.5 262,348 - GFF3770 0.62 -0.2 262,348 - GFF3770 0.62 +1.7
Or see this region's nucleotide sequence