Strain Fitness in Variovorax sp. SCN45 around GFF3752

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3750 and GFF3751 are separated by 46 nucleotidesGFF3751 and GFF3752 are separated by 65 nucleotidesGFF3752 and GFF3753 overlap by 4 nucleotides GFF3750 - no description, at 244,994 to 245,395 GFF3750 GFF3751 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 245,442 to 246,209 GFF3751 GFF3752 - KEGG: catechol 2,3-dioxygenase , at 246,275 to 246,826 GFF3752 GFF3753 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 246,823 to 247,842 GFF3753 Position (kb) 246 247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 245.334 kb on + strand, within GFF3750at 245.334 kb on + strand, within GFF3750at 245.334 kb on + strand, within GFF3750at 245.335 kb on - strand, within GFF3750at 245.335 kb on - strand, within GFF3750at 245.335 kb on - strand, within GFF3750at 245.384 kb on + strandat 245.384 kb on + strandat 245.385 kb on - strandat 245.385 kb on - strandat 245.385 kb on - strandat 245.385 kb on - strandat 245.419 kb on + strandat 245.419 kb on + strandat 245.420 kb on - strandat 245.491 kb on + strandat 245.491 kb on + strandat 245.491 kb on + strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.539 kb on + strand, within GFF3751at 245.539 kb on + strand, within GFF3751at 245.540 kb on - strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.914 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.132 kb on + strand, within GFF3751at 246.133 kb on - strandat 246.133 kb on - strandat 246.372 kb on + strand, within GFF3752at 246.372 kb on + strand, within GFF3752at 246.372 kb on + strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.420 kb on + strand, within GFF3752at 246.420 kb on + strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.516 kb on + strand, within GFF3752at 246.558 kb on + strand, within GFF3752at 246.558 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.726 kb on + strand, within GFF3752at 246.726 kb on + strand, within GFF3752at 246.727 kb on - strand, within GFF3752at 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.936 kb on - strand, within GFF3753at 247.076 kb on + strand, within GFF3753at 247.077 kb on - strand, within GFF3753at 247.083 kb on - strand, within GFF3753at 247.169 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.568 kb on + strand, within GFF3753at 247.568 kb on + strand, within GFF3753at 247.569 kb on - strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.727 kb on + strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753at 247.728 kb on - strand, within GFF3753

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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245,334 + GFF3750 0.85 -0.1
245,334 + GFF3750 0.85 +0.7
245,334 + GFF3750 0.85 -0.4
245,335 - GFF3750 0.85 -0.0
245,335 - GFF3750 0.85 +0.3
245,335 - GFF3750 0.85 -0.6
245,384 + -0.6
245,384 + -0.3
245,385 - -4.0
245,385 - +0.7
245,385 - -3.3
245,385 - +2.6
245,419 + -2.9
245,419 + +0.0
245,420 - -1.7
245,491 + +0.9
245,491 + -0.5
245,491 + +1.6
245,492 - -1.1
245,492 - -3.4
245,492 - -2.1
245,492 - -3.0
245,492 - -1.2
245,539 + GFF3751 0.13 -1.5
245,539 + GFF3751 0.13 -3.1
245,540 - GFF3751 0.13 -2.8
245,689 + GFF3751 0.32 -1.8
245,689 + GFF3751 0.32 -2.6
245,689 + GFF3751 0.32 +1.4
245,689 + GFF3751 0.32 -1.8
245,690 - GFF3751 0.32 +0.4
245,690 - GFF3751 0.32 +0.1
245,690 - GFF3751 0.32 -1.5
245,690 - GFF3751 0.32 -0.1
245,690 - GFF3751 0.32 -1.1
245,690 - GFF3751 0.32 -2.5
245,914 + GFF3751 0.61 -1.8
246,091 + GFF3751 0.85 -1.8
246,091 + GFF3751 0.85 -1.3
246,091 + GFF3751 0.85 +0.9
246,091 + GFF3751 0.85 -2.2
246,092 - GFF3751 0.85 -1.0
246,092 - GFF3751 0.85 +0.0
246,092 - GFF3751 0.85 -0.3
246,132 + GFF3751 0.90 +1.8
246,133 - +0.6
246,133 - -1.7
246,372 + GFF3752 0.18 +0.9
246,372 + GFF3752 0.18 -2.8
246,372 + GFF3752 0.18 +1.2
246,409 - GFF3752 0.24 +0.1
246,409 - GFF3752 0.24 -0.1
246,409 - GFF3752 0.24 -0.4
246,409 - GFF3752 0.24 +0.1
246,420 + GFF3752 0.26 -1.3
246,420 + GFF3752 0.26 -1.3
246,421 - GFF3752 0.26 -1.8
246,421 - GFF3752 0.26 -0.6
246,421 - GFF3752 0.26 -0.8
246,421 - GFF3752 0.26 -1.0
246,421 - GFF3752 0.26 -1.2
246,421 - GFF3752 0.26 -2.7
246,421 - GFF3752 0.26 +0.8
246,421 - GFF3752 0.26 -2.0
246,516 + GFF3752 0.44 -1.2
246,558 + GFF3752 0.51 -0.7
246,558 + GFF3752 0.51 +2.7
246,594 + GFF3752 0.58 -1.8
246,594 + GFF3752 0.58 -1.7
246,594 + GFF3752 0.58 +1.6
246,595 - GFF3752 0.58 -0.8
246,595 - GFF3752 0.58 -1.4
246,595 - GFF3752 0.58 +1.4
246,595 - GFF3752 0.58 -0.3
246,726 + GFF3752 0.82 -1.3
246,726 + GFF3752 0.82 -1.5
246,727 - GFF3752 0.82 +1.7
246,848 + +0.8
246,848 + +0.3
246,848 + -0.5
246,848 + -2.8
246,848 + -1.4
246,848 + -0.2
246,848 + -0.6
246,848 + -0.9
246,848 + +0.8
246,848 + -1.3
246,848 + -0.2
246,848 + -1.9
246,848 + -0.5
246,848 + +0.3
246,848 + -0.6
246,848 + -1.7
246,849 - -0.8
246,849 - -1.8
246,849 - -0.8
246,849 - -1.9
246,849 - -0.6
246,849 - -0.1
246,849 - +0.2
246,849 - -0.9
246,849 - +0.2
246,849 - +0.3
246,935 + GFF3753 0.11 -0.6
246,935 + GFF3753 0.11 -0.8
246,935 + GFF3753 0.11 +2.9
246,935 + GFF3753 0.11 -0.1
246,936 - GFF3753 0.11 +0.8
247,076 + GFF3753 0.25 -1.8
247,077 - GFF3753 0.25 -0.9
247,083 - GFF3753 0.25 -0.2
247,169 + GFF3753 0.34 -4.1
247,193 + GFF3753 0.36 -0.6
247,193 + GFF3753 0.36 -1.2
247,193 + GFF3753 0.36 -0.6
247,193 + GFF3753 0.36 +2.7
247,193 + GFF3753 0.36 +2.2
247,568 + GFF3753 0.73 -1.0
247,568 + GFF3753 0.73 +0.1
247,569 - GFF3753 0.73 -0.9
247,727 + GFF3753 0.89 -2.6
247,727 + GFF3753 0.89 -0.9
247,727 + GFF3753 0.89 +0.1
247,727 + GFF3753 0.89 -1.9
247,727 + GFF3753 0.89 -0.4
247,727 + GFF3753 0.89 -1.6
247,727 + GFF3753 0.89 +0.8
247,727 + GFF3753 0.89 -2.0
247,727 + GFF3753 0.89 -0.5
247,727 + GFF3753 0.89 -1.9
247,727 + GFF3753 0.89 -0.9
247,727 + GFF3753 0.89 +0.6
247,728 - GFF3753 0.89 -1.1
247,728 - GFF3753 0.89 -1.8
247,728 - GFF3753 0.89 +0.2
247,728 - GFF3753 0.89 +1.4
247,728 - GFF3753 0.89 -1.4
247,728 - GFF3753 0.89 +2.4
247,728 - GFF3753 0.89 -1.7
247,728 - GFF3753 0.89 +1.0
247,728 - GFF3753 0.89 -0.8
247,728 - GFF3753 0.89 -1.8
247,728 - GFF3753 0.89 +1.3
247,728 - GFF3753 0.89 -2.2
247,728 - GFF3753 0.89 +2.4
247,728 - GFF3753 0.89 -0.4
247,728 - GFF3753 0.89 -0.9
247,728 - GFF3753 0.89 +0.1
247,728 - GFF3753 0.89 -0.4
247,728 - GFF3753 0.89 +0.1

Or see this region's nucleotide sequence