Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3746 and GFF3747 overlap by 4 nucleotides GFF3747 and GFF3748 are separated by 7 nucleotides GFF3748 and GFF3749 are separated by 72 nucleotides GFF3749 and GFF3750 overlap by 4 nucleotides
GFF3746 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 241,824 to 242,414
GFF3746
GFF3747 - putative esterase, at 242,411 to 243,253
GFF3747
GFF3748 - KEGG: dihydrodipicolinate synthase , at 243,261 to 244,118
GFF3748
GFF3749 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 244,191 to 244,997
GFF3749
GFF3750 - no description, at 244,994 to 245,395
GFF3750
Position (kb) 243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 242.314 kb on + strand, within GFF3746 at 242.314 kb on + strand, within GFF3746 at 242.315 kb on - strand, within GFF3746 at 242.315 kb on - strand, within GFF3746 at 242.315 kb on - strand, within GFF3746 at 242.571 kb on + strand, within GFF3747 at 242.571 kb on + strand, within GFF3747 at 242.571 kb on + strand, within GFF3747 at 242.572 kb on - strand, within GFF3747 at 242.733 kb on + strand, within GFF3747 at 242.734 kb on - strand, within GFF3747 at 242.937 kb on + strand, within GFF3747 at 242.937 kb on + strand, within GFF3747 at 242.937 kb on + strand, within GFF3747 at 242.938 kb on - strand, within GFF3747 at 242.959 kb on - strand, within GFF3747 at 243.022 kb on - strand, within GFF3747 at 243.022 kb on - strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.105 kb on + strand, within GFF3747 at 243.183 kb on + strand at 243.184 kb on - strand at 243.184 kb on - strand at 243.210 kb on + strand at 243.210 kb on + strand at 243.210 kb on + strand at 243.210 kb on + strand at 243.211 kb on - strand at 243.211 kb on - strand at 243.487 kb on + strand, within GFF3748 at 243.487 kb on + strand, within GFF3748 at 243.487 kb on + strand, within GFF3748 at 243.487 kb on + strand, within GFF3748 at 243.487 kb on + strand, within GFF3748 at 243.487 kb on + strand, within GFF3748 at 243.487 kb on + strand, within GFF3748 at 243.488 kb on - strand, within GFF3748 at 243.488 kb on - strand, within GFF3748 at 243.488 kb on - strand, within GFF3748 at 243.488 kb on - strand, within GFF3748 at 243.488 kb on - strand, within GFF3748 at 243.488 kb on - strand, within GFF3748 at 243.488 kb on - strand, within GFF3748 at 243.622 kb on + strand, within GFF3748 at 243.745 kb on + strand, within GFF3748 at 243.745 kb on + strand, within GFF3748 at 243.746 kb on - strand, within GFF3748 at 243.746 kb on - strand, within GFF3748 at 243.788 kb on - strand, within GFF3748 at 243.788 kb on - strand, within GFF3748 at 243.788 kb on - strand, within GFF3748 at 243.826 kb on + strand, within GFF3748 at 243.826 kb on + strand, within GFF3748 at 243.827 kb on - strand, within GFF3748 at 243.923 kb on - strand, within GFF3748 at 243.923 kb on - strand, within GFF3748 at 244.051 kb on + strand at 244.051 kb on + strand at 244.051 kb on + strand at 244.051 kb on + strand at 244.051 kb on + strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.052 kb on - strand at 244.143 kb on - strand at 244.228 kb on + strand at 244.229 kb on - strand at 244.558 kb on + strand, within GFF3749 at 245.070 kb on + strand, within GFF3750 at 245.071 kb on - strand, within GFF3750 at 245.071 kb on - strand, within GFF3750 at 245.071 kb on - strand, within GFF3750 at 245.073 kb on + strand, within GFF3750 at 245.073 kb on + strand, within GFF3750 at 245.073 kb on + strand, within GFF3750 at 245.074 kb on - strand, within GFF3750
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 242,314 + GFF3746 0.83 +1.1 242,314 + GFF3746 0.83 +0.7 242,315 - GFF3746 0.83 -1.7 242,315 - GFF3746 0.83 -0.6 242,315 - GFF3746 0.83 -1.1 242,571 + GFF3747 0.19 -1.4 242,571 + GFF3747 0.19 -1.9 242,571 + GFF3747 0.19 +1.2 242,572 - GFF3747 0.19 +0.4 242,733 + GFF3747 0.38 +2.4 242,734 - GFF3747 0.38 -0.2 242,937 + GFF3747 0.62 -0.4 242,937 + GFF3747 0.62 -0.8 242,937 + GFF3747 0.62 -0.5 242,938 - GFF3747 0.63 -2.4 242,959 - GFF3747 0.65 -2.8 243,022 - GFF3747 0.72 -0.9 243,022 - GFF3747 0.72 -1.6 243,036 + GFF3747 0.74 -1.8 243,036 + GFF3747 0.74 +0.9 243,036 + GFF3747 0.74 -0.5 243,036 + GFF3747 0.74 -1.3 243,036 + GFF3747 0.74 -0.2 243,036 + GFF3747 0.74 +0.1 243,036 + GFF3747 0.74 -1.8 243,036 + GFF3747 0.74 +1.7 243,036 + GFF3747 0.74 -2.2 243,037 - GFF3747 0.74 -0.1 243,037 - GFF3747 0.74 +2.1 243,037 - GFF3747 0.74 -1.9 243,037 - GFF3747 0.74 -0.5 243,037 - GFF3747 0.74 -0.3 243,037 - GFF3747 0.74 -2.1 243,037 - GFF3747 0.74 -0.1 243,037 - GFF3747 0.74 -1.0 243,037 - GFF3747 0.74 -2.6 243,037 - GFF3747 0.74 +0.7 243,037 - GFF3747 0.74 -0.9 243,037 - GFF3747 0.74 +0.1 243,037 - GFF3747 0.74 +0.8 243,037 - GFF3747 0.74 -0.9 243,105 + GFF3747 0.82 -0.9 243,183 + +0.6 243,184 - -2.2 243,184 - -1.5 243,210 + -3.5 243,210 + +0.2 243,210 + -2.1 243,210 + +1.4 243,211 - -0.7 243,211 - +1.0 243,487 + GFF3748 0.26 -0.8 243,487 + GFF3748 0.26 +0.3 243,487 + GFF3748 0.26 +1.1 243,487 + GFF3748 0.26 -0.8 243,487 + GFF3748 0.26 +0.7 243,487 + GFF3748 0.26 -0.6 243,487 + GFF3748 0.26 +2.2 243,488 - GFF3748 0.26 -0.1 243,488 - GFF3748 0.26 +1.6 243,488 - GFF3748 0.26 +0.1 243,488 - GFF3748 0.26 -0.9 243,488 - GFF3748 0.26 -1.5 243,488 - GFF3748 0.26 +0.4 243,488 - GFF3748 0.26 +0.2 243,622 + GFF3748 0.42 +1.9 243,745 + GFF3748 0.56 -1.9 243,745 + GFF3748 0.56 -1.1 243,746 - GFF3748 0.57 -1.8 243,746 - GFF3748 0.57 -0.5 243,788 - GFF3748 0.61 -0.9 243,788 - GFF3748 0.61 +4.0 243,788 - GFF3748 0.61 -0.8 243,826 + GFF3748 0.66 -1.5 243,826 + GFF3748 0.66 +0.5 243,827 - GFF3748 0.66 -0.7 243,923 - GFF3748 0.77 +0.8 243,923 - GFF3748 0.77 -1.6 244,051 + -1.4 244,051 + +1.4 244,051 + -0.9 244,051 + +0.9 244,051 + -1.3 244,052 - +2.4 244,052 - -2.6 244,052 - -0.4 244,052 - -2.1 244,052 - -1.5 244,052 - -1.3 244,052 - -0.2 244,143 - +0.6 244,228 + -0.8 244,229 - -1.5 244,558 + GFF3749 0.45 +0.6 245,070 + GFF3750 0.19 -0.2 245,071 - GFF3750 0.19 -0.7 245,071 - GFF3750 0.19 +1.0 245,071 - GFF3750 0.19 -0.0 245,073 + GFF3750 0.20 +0.8 245,073 + GFF3750 0.20 +0.8 245,073 + GFF3750 0.20 +3.5 245,074 - GFF3750 0.20 -0.0
Or see this region's nucleotide sequence