Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3727 and GFF3728 are separated by 168 nucleotides GFF3728 and GFF3729 are separated by 27 nucleotides GFF3729 and GFF3730 are separated by 119 nucleotides
GFF3727 - Transcriptional regulator, AcrR family, at 226,520 to 227,161
GFF3727
GFF3728 - no description, at 227,330 to 227,557
GFF3728
GFF3729 - Transcriptional regulator, AraC family, at 227,585 to 228,352
GFF3729
GFF3730 - Integral membrane protein, at 228,472 to 229,290
GFF3730
Position (kb) 227
228
229 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 226.637 kb on + strand, within GFF3727 at 226.637 kb on + strand, within GFF3727 at 226.637 kb on + strand, within GFF3727 at 226.637 kb on + strand, within GFF3727 at 226.637 kb on + strand, within GFF3727 at 226.637 kb on + strand, within GFF3727 at 226.638 kb on - strand, within GFF3727 at 226.638 kb on - strand, within GFF3727 at 226.638 kb on - strand, within GFF3727 at 226.638 kb on - strand, within GFF3727 at 226.758 kb on + strand, within GFF3727 at 226.759 kb on - strand, within GFF3727 at 226.759 kb on - strand, within GFF3727 at 226.759 kb on - strand, within GFF3727 at 226.759 kb on - strand, within GFF3727 at 226.847 kb on + strand, within GFF3727 at 226.847 kb on + strand, within GFF3727 at 226.847 kb on + strand, within GFF3727 at 226.848 kb on - strand, within GFF3727 at 227.084 kb on + strand, within GFF3727 at 227.084 kb on + strand, within GFF3727 at 227.084 kb on + strand, within GFF3727 at 227.084 kb on + strand, within GFF3727 at 227.084 kb on + strand, within GFF3727 at 227.084 kb on + strand, within GFF3727 at 227.085 kb on - strand, within GFF3727 at 227.085 kb on - strand, within GFF3727 at 227.162 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.280 kb on + strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.281 kb on - strand at 227.661 kb on + strand at 227.661 kb on + strand at 227.661 kb on + strand at 227.991 kb on + strand, within GFF3729 at 227.992 kb on - strand, within GFF3729 at 227.992 kb on - strand, within GFF3729 at 227.992 kb on - strand, within GFF3729 at 228.099 kb on + strand, within GFF3729 at 228.099 kb on + strand, within GFF3729 at 228.231 kb on + strand, within GFF3729 at 228.231 kb on + strand, within GFF3729 at 228.296 kb on + strand at 228.296 kb on + strand at 228.297 kb on - strand at 228.393 kb on + strand at 228.393 kb on + strand at 228.433 kb on + strand at 228.433 kb on + strand at 228.433 kb on + strand at 228.433 kb on + strand at 228.433 kb on + strand at 228.433 kb on + strand at 228.434 kb on - strand at 228.434 kb on - strand at 228.434 kb on - strand at 228.434 kb on - strand at 228.434 kb on - strand at 228.434 kb on - strand at 228.481 kb on + strand at 228.481 kb on + strand at 228.481 kb on + strand at 228.481 kb on + strand at 228.481 kb on + strand at 228.481 kb on + strand at 228.481 kb on + strand at 228.481 kb on + strand at 228.482 kb on - strand at 228.482 kb on - strand at 228.482 kb on - strand at 228.482 kb on - strand at 228.482 kb on - strand at 228.482 kb on - strand at 228.823 kb on + strand, within GFF3730 at 228.824 kb on - strand, within GFF3730 at 229.081 kb on + strand, within GFF3730 at 229.081 kb on + strand, within GFF3730 at 229.081 kb on + strand, within GFF3730 at 229.081 kb on + strand, within GFF3730 at 229.081 kb on + strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.082 kb on - strand, within GFF3730 at 229.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 226,637 + GFF3727 0.18 -1.1 226,637 + GFF3727 0.18 +0.4 226,637 + GFF3727 0.18 +0.8 226,637 + GFF3727 0.18 -0.1 226,637 + GFF3727 0.18 -0.9 226,637 + GFF3727 0.18 +1.3 226,638 - GFF3727 0.18 +0.1 226,638 - GFF3727 0.18 -1.7 226,638 - GFF3727 0.18 +0.1 226,638 - GFF3727 0.18 +0.1 226,758 + GFF3727 0.37 -0.4 226,759 - GFF3727 0.37 +0.8 226,759 - GFF3727 0.37 -1.3 226,759 - GFF3727 0.37 -1.2 226,759 - GFF3727 0.37 -1.3 226,847 + GFF3727 0.51 +0.8 226,847 + GFF3727 0.51 -0.6 226,847 + GFF3727 0.51 -1.5 226,848 - GFF3727 0.51 +0.1 227,084 + GFF3727 0.88 +0.6 227,084 + GFF3727 0.88 +0.3 227,084 + GFF3727 0.88 -0.9 227,084 + GFF3727 0.88 +0.8 227,084 + GFF3727 0.88 -1.6 227,084 + GFF3727 0.88 -1.4 227,085 - GFF3727 0.88 -0.2 227,085 - GFF3727 0.88 +0.8 227,162 + -4.1 227,280 + -0.2 227,280 + -0.7 227,280 + +0.5 227,280 + -0.4 227,280 + +0.5 227,280 + -0.6 227,280 + -1.1 227,280 + +0.8 227,280 + -2.8 227,280 + -1.8 227,280 + +0.5 227,280 + -0.6 227,281 - -2.5 227,281 - -1.6 227,281 - +0.5 227,281 - -0.9 227,281 - -0.5 227,281 - -2.7 227,281 - -1.5 227,281 - -2.1 227,281 - +1.4 227,281 - +0.4 227,281 - +0.1 227,281 - -1.1 227,281 - -0.5 227,281 - -1.8 227,281 - -0.6 227,281 - +0.5 227,661 + +0.0 227,661 + +0.8 227,661 + +0.2 227,991 + GFF3729 0.53 -1.0 227,992 - GFF3729 0.53 -1.4 227,992 - GFF3729 0.53 -0.5 227,992 - GFF3729 0.53 +1.2 228,099 + GFF3729 0.67 -1.5 228,099 + GFF3729 0.67 -1.1 228,231 + GFF3729 0.84 -0.7 228,231 + GFF3729 0.84 +0.6 228,296 + +0.1 228,296 + -2.9 228,297 - -3.5 228,393 + -2.4 228,393 + -0.8 228,433 + +0.4 228,433 + +0.1 228,433 + -0.8 228,433 + +0.1 228,433 + -0.8 228,433 + -2.5 228,434 - -1.7 228,434 - -0.1 228,434 - +0.7 228,434 - +0.5 228,434 - +0.6 228,434 - -1.2 228,481 + +0.3 228,481 + -1.4 228,481 + +0.7 228,481 + +0.5 228,481 + -1.2 228,481 + -3.4 228,481 + -2.6 228,481 + -1.0 228,482 - -0.9 228,482 - +0.4 228,482 - -0.2 228,482 - +1.6 228,482 - +0.7 228,482 - -1.1 228,823 + GFF3730 0.43 -1.8 228,824 - GFF3730 0.43 +0.8 229,081 + GFF3730 0.74 -2.1 229,081 + GFF3730 0.74 -1.1 229,081 + GFF3730 0.74 +0.8 229,081 + GFF3730 0.74 -0.3 229,081 + GFF3730 0.74 +0.2 229,082 - GFF3730 0.74 +0.4 229,082 - GFF3730 0.74 +0.4 229,082 - GFF3730 0.74 +0.8 229,082 - GFF3730 0.74 +0.8 229,082 - GFF3730 0.74 +0.4 229,082 - GFF3730 0.74 -1.5 229,082 - GFF3730 0.74 -0.7 229,082 - GFF3730 0.74 -2.7 229,082 - GFF3730 0.74 +0.5 229,082 - GFF3730 0.74 -0.4 229,244 - +0.4
Or see this region's nucleotide sequence