Strain Fitness in Variovorax sp. SCN45 around GFF3611

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3610 and GFF3611 are separated by 8 nucleotidesGFF3611 and GFF3612 are separated by 34 nucleotides GFF3610 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 123,597 to 124,370 GFF3610 GFF3611 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 124,379 to 126,235 GFF3611 GFF3612 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 126,270 to 127,436 GFF3612 Position (kb) 124 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 123.639 kb on + strandat 123.640 kb on - strandat 123.640 kb on - strandat 123.640 kb on - strandat 123.680 kb on - strand, within GFF3610at 123.703 kb on + strand, within GFF3610at 123.704 kb on - strand, within GFF3610at 123.822 kb on + strand, within GFF3610at 123.823 kb on - strand, within GFF3610at 123.912 kb on + strand, within GFF3610at 123.912 kb on + strand, within GFF3610at 123.913 kb on - strand, within GFF3610at 123.960 kb on + strand, within GFF3610at 123.960 kb on + strand, within GFF3610at 123.961 kb on - strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.967 kb on - strand, within GFF3610at 123.967 kb on - strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.369 kb on - strandat 124.369 kb on - strandat 124.567 kb on - strand, within GFF3611at 124.694 kb on + strand, within GFF3611at 124.695 kb on - strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.725 kb on - strand, within GFF3611at 124.725 kb on - strand, within GFF3611at 124.988 kb on + strand, within GFF3611at 124.988 kb on + strand, within GFF3611at 124.989 kb on - strand, within GFF3611at 125.048 kb on + strand, within GFF3611at 125.049 kb on - strand, within GFF3611at 125.049 kb on - strand, within GFF3611at 125.064 kb on - strand, within GFF3611at 125.150 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.273 kb on + strand, within GFF3611at 125.274 kb on - strand, within GFF3611at 125.327 kb on + strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.525 kb on + strand, within GFF3611at 125.525 kb on + strand, within GFF3611at 125.526 kb on - strand, within GFF3611at 125.526 kb on - strand, within GFF3611at 125.526 kb on - strand, within GFF3611at 125.643 kb on - strand, within GFF3611at 125.900 kb on + strand, within GFF3611at 125.900 kb on + strand, within GFF3611at 125.900 kb on + strand, within GFF3611at 125.901 kb on - strand, within GFF3611at 125.901 kb on - strand, within GFF3611at 125.939 kb on + strand, within GFF3611at 125.940 kb on - strand, within GFF3611at 125.940 kb on - strand, within GFF3611at 126.017 kb on + strand, within GFF3611at 126.018 kb on - strand, within GFF3611at 126.203 kb on + strandat 126.204 kb on - strandat 126.204 kb on - strandat 126.204 kb on - strandat 126.216 kb on + strandat 126.216 kb on + strandat 126.216 kb on + strandat 126.217 kb on - strandat 126.217 kb on - strandat 126.217 kb on - strandat 126.217 kb on - strandat 126.227 kb on + strandat 126.228 kb on - strandat 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.648 kb on + strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.649 kb on - strand, within GFF3612at 126.678 kb on + strand, within GFF3612at 126.679 kb on - strand, within GFF3612at 126.679 kb on - strand, within GFF3612at 126.702 kb on + strand, within GFF3612at 126.702 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.720 kb on + strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.721 kb on - strand, within GFF3612at 126.723 kb on + strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.724 kb on - strand, within GFF3612at 126.792 kb on + strand, within GFF3612at 126.793 kb on - strand, within GFF3612at 127.045 kb on - strand, within GFF3612at 127.045 kb on - strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.092 kb on + strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.093 kb on - strand, within GFF3612at 127.120 kb on - strand, within GFF3612at 127.120 kb on - strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.164 kb on + strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.165 kb on - strand, within GFF3612at 127.207 kb on - strand, within GFF3612at 127.212 kb on + strand, within GFF3612at 127.213 kb on - strand, within GFF3612

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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123,639 + +0.5
123,640 - +0.1
123,640 - -1.4
123,640 - -1.1
123,680 - GFF3610 0.11 -2.6
123,703 + GFF3610 0.14 +0.2
123,704 - GFF3610 0.14 -1.3
123,822 + GFF3610 0.29 -0.8
123,823 - GFF3610 0.29 -0.4
123,912 + GFF3610 0.41 +1.4
123,912 + GFF3610 0.41 +1.7
123,913 - GFF3610 0.41 -1.4
123,960 + GFF3610 0.47 -0.8
123,960 + GFF3610 0.47 -1.7
123,961 - GFF3610 0.47 +0.4
123,966 + GFF3610 0.48 +1.0
123,966 + GFF3610 0.48 -0.6
123,966 + GFF3610 0.48 +2.4
123,966 + GFF3610 0.48 -0.8
123,966 + GFF3610 0.48 -0.8
123,967 - GFF3610 0.48 -0.6
123,967 - GFF3610 0.48 +2.9
124,224 + GFF3610 0.81 +1.0
124,224 + GFF3610 0.81 -0.7
124,224 + GFF3610 0.81 -0.6
124,224 + GFF3610 0.81 -1.5
124,225 - GFF3610 0.81 +0.2
124,225 - GFF3610 0.81 -1.8
124,225 - GFF3610 0.81 +2.2
124,225 - GFF3610 0.81 +0.5
124,369 - -1.9
124,369 - +0.0
124,567 - GFF3611 0.10 -1.3
124,694 + GFF3611 0.17 -1.7
124,695 - GFF3611 0.17 -3.0
124,724 + GFF3611 0.19 +2.6
124,724 + GFF3611 0.19 -0.1
124,724 + GFF3611 0.19 -1.8
124,724 + GFF3611 0.19 -3.6
124,725 - GFF3611 0.19 -1.0
124,725 - GFF3611 0.19 -0.6
124,988 + GFF3611 0.33 -0.0
124,988 + GFF3611 0.33 -1.9
124,989 - GFF3611 0.33 +0.9
125,048 + GFF3611 0.36 -0.4
125,049 - GFF3611 0.36 -1.1
125,049 - GFF3611 0.36 -2.0
125,064 - GFF3611 0.37 -1.5
125,150 + GFF3611 0.42 -2.4
125,162 + GFF3611 0.42 -2.2
125,162 + GFF3611 0.42 -0.6
125,162 + GFF3611 0.42 -0.4
125,162 + GFF3611 0.42 -1.2
125,163 - GFF3611 0.42 -2.3
125,163 - GFF3611 0.42 -1.3
125,163 - GFF3611 0.42 -3.1
125,163 - GFF3611 0.42 -1.3
125,273 + GFF3611 0.48 +1.4
125,274 - GFF3611 0.48 +0.0
125,327 + GFF3611 0.51 -1.2
125,328 - GFF3611 0.51 +0.4
125,328 - GFF3611 0.51 -0.8
125,328 - GFF3611 0.51 -0.2
125,525 + GFF3611 0.62 -1.2
125,525 + GFF3611 0.62 -1.8
125,526 - GFF3611 0.62 -0.9
125,526 - GFF3611 0.62 -0.1
125,526 - GFF3611 0.62 -0.7
125,643 - GFF3611 0.68 +1.2
125,900 + GFF3611 0.82 -1.4
125,900 + GFF3611 0.82 +1.1
125,900 + GFF3611 0.82 +0.2
125,901 - GFF3611 0.82 +0.3
125,901 - GFF3611 0.82 -2.8
125,939 + GFF3611 0.84 -0.7
125,940 - GFF3611 0.84 -0.4
125,940 - GFF3611 0.84 -1.5
126,017 + GFF3611 0.88 -2.3
126,018 - GFF3611 0.88 -1.6
126,203 + -2.1
126,204 - +0.7
126,204 - -1.2
126,204 - +0.2
126,216 + -2.8
126,216 + -0.6
126,216 + +1.0
126,217 - -1.7
126,217 - -2.5
126,217 - -2.0
126,217 - -0.6
126,227 + -1.2
126,228 - +2.8
126,648 + GFF3612 0.32 +0.6
126,648 + GFF3612 0.32 -0.7
126,648 + GFF3612 0.32 -2.3
126,648 + GFF3612 0.32 +0.5
126,648 + GFF3612 0.32 -1.3
126,648 + GFF3612 0.32 -0.9
126,648 + GFF3612 0.32 +0.5
126,649 - GFF3612 0.32 -0.2
126,649 - GFF3612 0.32 +1.0
126,649 - GFF3612 0.32 -1.5
126,649 - GFF3612 0.32 +0.1
126,649 - GFF3612 0.32 -1.1
126,649 - GFF3612 0.32 -0.0
126,649 - GFF3612 0.32 -0.9
126,678 + GFF3612 0.35 +0.0
126,679 - GFF3612 0.35 +0.7
126,679 - GFF3612 0.35 -2.9
126,702 + GFF3612 0.37 -3.4
126,702 + GFF3612 0.37 -0.9
126,720 + GFF3612 0.39 -1.7
126,720 + GFF3612 0.39 -1.2
126,720 + GFF3612 0.39 +0.1
126,720 + GFF3612 0.39 -0.7
126,720 + GFF3612 0.39 -2.8
126,720 + GFF3612 0.39 +0.4
126,721 - GFF3612 0.39 +0.3
126,721 - GFF3612 0.39 -1.5
126,721 - GFF3612 0.39 -2.9
126,721 - GFF3612 0.39 -0.8
126,721 - GFF3612 0.39 -1.8
126,723 + GFF3612 0.39 -2.1
126,724 - GFF3612 0.39 -1.7
126,724 - GFF3612 0.39 -1.8
126,724 - GFF3612 0.39 +0.4
126,724 - GFF3612 0.39 +0.4
126,792 + GFF3612 0.45 +1.0
126,793 - GFF3612 0.45 +0.8
127,045 - GFF3612 0.66 -0.1
127,045 - GFF3612 0.66 -0.1
127,092 + GFF3612 0.70 +0.4
127,092 + GFF3612 0.70 +0.7
127,092 + GFF3612 0.70 +0.5
127,092 + GFF3612 0.70 +0.8
127,093 - GFF3612 0.71 -0.4
127,093 - GFF3612 0.71 -1.7
127,093 - GFF3612 0.71 -1.2
127,093 - GFF3612 0.71 -0.8
127,093 - GFF3612 0.71 -2.9
127,093 - GFF3612 0.71 -2.1
127,093 - GFF3612 0.71 +0.0
127,120 - GFF3612 0.73 +1.1
127,120 - GFF3612 0.73 +0.5
127,164 + GFF3612 0.77 -0.9
127,164 + GFF3612 0.77 -1.8
127,164 + GFF3612 0.77 +1.1
127,164 + GFF3612 0.77 +1.3
127,164 + GFF3612 0.77 +1.3
127,164 + GFF3612 0.77 -1.3
127,164 + GFF3612 0.77 -0.5
127,165 - GFF3612 0.77 -0.7
127,165 - GFF3612 0.77 -2.7
127,165 - GFF3612 0.77 -0.9
127,207 - GFF3612 0.80 +0.5
127,212 + GFF3612 0.81 -0.8
127,213 - GFF3612 0.81 +2.1

Or see this region's nucleotide sequence