Strain Fitness in Variovorax sp. SCN45 around GFF3605

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3604 and GFF3605 are separated by 63 nucleotidesGFF3605 and GFF3606 are separated by 111 nucleotidesGFF3606 and GFF3607 are separated by 14 nucleotides GFF3604 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 117,387 to 118,589 GFF3604 GFF3605 - Esterase/lipase, at 118,653 to 119,594 GFF3605 GFF3606 - Similarities with probable transcriptional regulator LumQ, at 119,706 to 120,536 GFF3606 GFF3607 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 120,551 to 121,426 GFF3607 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.783 kb on + strand, within GFF3604at 117.783 kb on + strand, within GFF3604at 117.784 kb on - strand, within GFF3604at 117.784 kb on - strand, within GFF3604at 117.784 kb on - strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.931 kb on - strand, within GFF3604at 117.931 kb on - strand, within GFF3604at 117.997 kb on - strand, within GFF3604at 118.095 kb on + strand, within GFF3604at 118.096 kb on - strand, within GFF3604at 118.096 kb on - strand, within GFF3604at 118.096 kb on - strand, within GFF3604at 118.587 kb on + strandat 118.750 kb on - strand, within GFF3605at 118.852 kb on - strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 119.066 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.265 kb on + strand, within GFF3605at 119.266 kb on - strand, within GFF3605at 119.266 kb on - strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.793 kb on + strand, within GFF3606at 119.847 kb on + strand, within GFF3606at 119.847 kb on + strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 119.848 kb on - strand, within GFF3606at 120.366 kb on + strand, within GFF3606at 120.367 kb on - strand, within GFF3606at 120.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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117,783 + GFF3604 0.33 +0.1
117,783 + GFF3604 0.33 -0.2
117,784 - GFF3604 0.33 -1.5
117,784 - GFF3604 0.33 -2.6
117,784 - GFF3604 0.33 +0.3
117,930 + GFF3604 0.45 -0.9
117,930 + GFF3604 0.45 -0.9
117,930 + GFF3604 0.45 +1.2
117,930 + GFF3604 0.45 -1.3
117,931 - GFF3604 0.45 +0.2
117,931 - GFF3604 0.45 +0.9
117,997 - GFF3604 0.51 +0.9
118,095 + GFF3604 0.59 -1.7
118,096 - GFF3604 0.59 -2.4
118,096 - GFF3604 0.59 -0.4
118,096 - GFF3604 0.59 -1.5
118,587 + -0.2
118,750 - GFF3605 0.10 +0.8
118,852 - GFF3605 0.21 -0.6
118,896 + GFF3605 0.26 +0.4
118,896 + GFF3605 0.26 -0.1
118,896 + GFF3605 0.26 -1.7
118,897 - GFF3605 0.26 +1.2
118,897 - GFF3605 0.26 +0.8
118,897 - GFF3605 0.26 +1.8
118,897 - GFF3605 0.26 +1.8
118,897 - GFF3605 0.26 +0.8
118,897 - GFF3605 0.26 +0.3
118,897 - GFF3605 0.26 +0.2
118,897 - GFF3605 0.26 +1.1
118,899 + GFF3605 0.26 -0.2
118,899 + GFF3605 0.26 -0.9
118,899 + GFF3605 0.26 +1.3
118,899 + GFF3605 0.26 +0.1
118,899 + GFF3605 0.26 -1.7
118,899 + GFF3605 0.26 -1.2
118,899 + GFF3605 0.26 -0.3
118,900 - GFF3605 0.26 -1.3
118,900 - GFF3605 0.26 -2.5
118,900 - GFF3605 0.26 -2.8
118,900 - GFF3605 0.26 -1.8
119,066 - GFF3605 0.44 +0.2
119,209 - GFF3605 0.59 -1.0
119,209 - GFF3605 0.59 -0.5
119,209 - GFF3605 0.59 +1.3
119,265 + GFF3605 0.65 +1.5
119,266 - GFF3605 0.65 -0.3
119,266 - GFF3605 0.65 +0.3
119,292 + GFF3605 0.68 -2.4
119,292 + GFF3605 0.68 -1.5
119,292 + GFF3605 0.68 -2.9
119,292 + GFF3605 0.68 -1.0
119,293 - GFF3605 0.68 -1.2
119,293 - GFF3605 0.68 -0.2
119,293 - GFF3605 0.68 +0.8
119,293 - GFF3605 0.68 -0.4
119,307 + GFF3605 0.69 -0.3
119,307 + GFF3605 0.69 -1.1
119,307 + GFF3605 0.69 -1.8
119,307 + GFF3605 0.69 -0.1
119,308 - GFF3605 0.70 -1.5
119,308 - GFF3605 0.70 +2.6
119,308 - GFF3605 0.70 -0.5
119,308 - GFF3605 0.70 -0.5
119,308 - GFF3605 0.70 -1.1
119,308 - GFF3605 0.70 +0.2
119,308 - GFF3605 0.70 +0.0
119,396 + GFF3605 0.79 +0.8
119,396 + GFF3605 0.79 -1.3
119,396 + GFF3605 0.79 -0.2
119,475 + GFF3605 0.87 -0.1
119,475 + GFF3605 0.87 -3.1
119,475 + GFF3605 0.87 +0.8
119,475 + GFF3605 0.87 -3.7
119,476 - GFF3605 0.87 +0.9
119,476 - GFF3605 0.87 -2.6
119,476 - GFF3605 0.87 -1.6
119,793 + GFF3606 0.10 -0.0
119,847 + GFF3606 0.17 +0.2
119,847 + GFF3606 0.17 +0.7
119,848 - GFF3606 0.17 -1.4
119,848 - GFF3606 0.17 -1.3
119,848 - GFF3606 0.17 +0.6
119,848 - GFF3606 0.17 -1.2
120,366 + GFF3606 0.79 +0.8
120,367 - GFF3606 0.80 -0.2
120,457 - -2.2

Or see this region's nucleotide sequence