Strain Fitness in Variovorax sp. SCN45 around GFF3565

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3564 and GFF3565 are separated by 42 nucleotidesGFF3565 and GFF3566 are separated by 92 nucleotidesGFF3566 and GFF3567 overlap by 10 nucleotides GFF3564 - BUG/TctC family periplasmic protein, at 75,743 to 76,720 GFF3564 GFF3565 - Acyl-CoA dehydrogenase, at 76,763 to 78,469 GFF3565 GFF3566 - Transcriptional regulator, LysR family, at 78,562 to 79,461 GFF3566 GFF3567 - YihE protein, required for LPS synthesis, at 79,452 to 80,486 GFF3567 Position (kb) 76 77 78 79Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 75.981 kb on + strand, within GFF3564at 75.982 kb on - strand, within GFF3564at 75.990 kb on + strand, within GFF3564at 75.990 kb on + strand, within GFF3564at 75.991 kb on - strand, within GFF3564at 76.013 kb on + strand, within GFF3564at 76.013 kb on + strand, within GFF3564at 76.083 kb on + strand, within GFF3564at 76.083 kb on + strand, within GFF3564at 76.084 kb on - strand, within GFF3564at 76.167 kb on + strand, within GFF3564at 76.167 kb on + strand, within GFF3564at 76.167 kb on + strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.284 kb on + strand, within GFF3564at 76.285 kb on - strand, within GFF3564at 76.285 kb on - strand, within GFF3564at 76.285 kb on - strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.408 kb on - strand, within GFF3564at 76.485 kb on + strand, within GFF3564at 76.485 kb on + strand, within GFF3564at 76.486 kb on - strand, within GFF3564at 76.486 kb on - strand, within GFF3564at 76.486 kb on - strand, within GFF3564at 76.947 kb on + strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 77.232 kb on + strand, within GFF3565at 77.233 kb on - strand, within GFF3565at 77.233 kb on - strand, within GFF3565at 77.334 kb on + strand, within GFF3565at 77.335 kb on - strand, within GFF3565at 77.616 kb on + strand, within GFF3565at 77.616 kb on + strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.986 kb on - strand, within GFF3565at 77.986 kb on - strand, within GFF3565at 77.986 kb on - strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.102 kb on + strand, within GFF3565at 78.102 kb on + strand, within GFF3565at 78.102 kb on + strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.378 kb on + strandat 78.379 kb on - strandat 78.522 kb on + strandat 78.523 kb on - strandat 78.558 kb on - strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 79.307 kb on - strand, within GFF3566at 79.366 kb on + strand, within GFF3566at 79.366 kb on + strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.460 kb on - strandat 79.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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75,981 + GFF3564 0.24 +0.4
75,982 - GFF3564 0.24 -0.7
75,990 + GFF3564 0.25 -2.3
75,990 + GFF3564 0.25 +2.0
75,991 - GFF3564 0.25 -2.6
76,013 + GFF3564 0.28 -1.3
76,013 + GFF3564 0.28 +0.8
76,083 + GFF3564 0.35 -0.8
76,083 + GFF3564 0.35 -4.1
76,084 - GFF3564 0.35 -0.9
76,167 + GFF3564 0.43 +0.2
76,167 + GFF3564 0.43 +1.0
76,167 + GFF3564 0.43 -0.2
76,168 - GFF3564 0.43 +1.1
76,168 - GFF3564 0.43 +0.5
76,168 - GFF3564 0.43 +0.4
76,168 - GFF3564 0.43 +1.4
76,168 - GFF3564 0.43 -0.5
76,254 + GFF3564 0.52 +0.1
76,254 + GFF3564 0.52 +1.9
76,254 + GFF3564 0.52 +0.1
76,254 + GFF3564 0.52 -1.9
76,254 + GFF3564 0.52 +0.7
76,254 + GFF3564 0.52 +0.0
76,254 + GFF3564 0.52 -1.3
76,254 + GFF3564 0.52 +1.6
76,254 + GFF3564 0.52 +0.5
76,255 - GFF3564 0.52 +1.7
76,255 - GFF3564 0.52 -0.8
76,255 - GFF3564 0.52 +1.4
76,255 - GFF3564 0.52 +0.2
76,255 - GFF3564 0.52 +0.4
76,255 - GFF3564 0.52 +0.3
76,255 - GFF3564 0.52 +0.9
76,255 - GFF3564 0.52 -2.5
76,255 - GFF3564 0.52 -2.2
76,284 + GFF3564 0.55 +1.1
76,285 - GFF3564 0.55 -3.0
76,285 - GFF3564 0.55 +0.7
76,285 - GFF3564 0.55 -0.6
76,392 + GFF3564 0.66 -1.1
76,392 + GFF3564 0.66 -0.1
76,392 + GFF3564 0.66 -1.0
76,392 + GFF3564 0.66 -1.4
76,392 + GFF3564 0.66 -1.2
76,392 + GFF3564 0.66 +0.8
76,393 - GFF3564 0.66 +0.7
76,393 - GFF3564 0.66 -1.1
76,393 - GFF3564 0.66 -1.2
76,393 - GFF3564 0.66 +0.3
76,408 - GFF3564 0.68 +0.4
76,485 + GFF3564 0.76 -1.9
76,485 + GFF3564 0.76 -0.2
76,486 - GFF3564 0.76 -1.2
76,486 - GFF3564 0.76 +2.7
76,486 - GFF3564 0.76 +0.9
76,947 + GFF3565 0.11 -0.2
76,948 - GFF3565 0.11 +0.3
76,948 - GFF3565 0.11 -1.9
76,948 - GFF3565 0.11 -2.4
76,948 - GFF3565 0.11 -0.0
76,948 - GFF3565 0.11 -1.2
77,232 + GFF3565 0.27 -1.3
77,233 - GFF3565 0.28 +3.0
77,233 - GFF3565 0.28 -2.0
77,334 + GFF3565 0.33 +0.4
77,335 - GFF3565 0.34 -1.8
77,616 + GFF3565 0.50 -1.4
77,616 + GFF3565 0.50 +0.4
77,617 - GFF3565 0.50 +0.0
77,617 - GFF3565 0.50 +0.2
77,617 - GFF3565 0.50 +0.0
77,985 + GFF3565 0.72 -1.0
77,985 + GFF3565 0.72 -2.8
77,985 + GFF3565 0.72 +0.1
77,985 + GFF3565 0.72 -0.1
77,986 - GFF3565 0.72 +0.1
77,986 - GFF3565 0.72 -2.6
77,986 - GFF3565 0.72 -1.7
78,090 + GFF3565 0.78 -1.4
78,090 + GFF3565 0.78 -1.5
78,090 + GFF3565 0.78 +0.6
78,090 + GFF3565 0.78 +1.9
78,090 + GFF3565 0.78 -2.2
78,091 - GFF3565 0.78 +1.2
78,091 - GFF3565 0.78 -0.4
78,091 - GFF3565 0.78 +0.9
78,091 - GFF3565 0.78 +0.8
78,091 - GFF3565 0.78 -1.1
78,091 - GFF3565 0.78 -0.2
78,091 - GFF3565 0.78 +1.7
78,091 - GFF3565 0.78 -1.1
78,091 - GFF3565 0.78 +0.7
78,102 + GFF3565 0.78 -2.4
78,102 + GFF3565 0.78 -1.1
78,102 + GFF3565 0.78 -2.7
78,103 - GFF3565 0.79 -2.2
78,103 - GFF3565 0.79 +0.1
78,103 - GFF3565 0.79 -1.4
78,103 - GFF3565 0.79 +1.1
78,207 + GFF3565 0.85 -1.8
78,207 + GFF3565 0.85 -1.5
78,207 + GFF3565 0.85 -1.4
78,207 + GFF3565 0.85 +0.5
78,207 + GFF3565 0.85 -1.7
78,208 - GFF3565 0.85 -1.5
78,208 - GFF3565 0.85 -1.4
78,208 - GFF3565 0.85 +2.4
78,208 - GFF3565 0.85 -0.1
78,208 - GFF3565 0.85 -0.4
78,208 - GFF3565 0.85 -1.2
78,208 - GFF3565 0.85 +0.2
78,208 - GFF3565 0.85 +2.4
78,208 - GFF3565 0.85 -0.4
78,378 + +0.1
78,379 - +0.8
78,522 + +0.1
78,523 - +1.8
78,558 - +0.7
78,583 + -1.4
78,583 + -0.6
78,583 + -1.3
78,583 + -0.2
78,583 + +0.3
78,583 + -0.9
78,583 + -0.3
78,583 + -0.1
78,583 + -0.8
78,583 + +0.1
78,584 - +0.3
78,584 - -0.0
78,584 - -0.1
78,584 - -0.9
78,584 - -0.3
78,584 - -1.3
78,868 + GFF3566 0.34 -0.8
78,868 + GFF3566 0.34 +2.4
78,868 + GFF3566 0.34 +0.1
78,868 + GFF3566 0.34 -0.6
79,307 - GFF3566 0.83 -0.1
79,366 + GFF3566 0.89 -1.3
79,366 + GFF3566 0.89 -0.7
79,367 - GFF3566 0.89 +0.8
79,367 - GFF3566 0.89 +1.3
79,367 - GFF3566 0.89 -1.7
79,367 - GFF3566 0.89 -2.6
79,460 - +1.0
79,460 - +0.8

Or see this region's nucleotide sequence