Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3495 and GFF3496 overlap by 4 nucleotides
GFF3495 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 222 to 1,055
GFF3495
GFF3496 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,052 to 2,974
GFF3496
Position (kb) 0
1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.241 kb on + strand at 0.242 kb on - strand at 0.308 kb on - strand, within GFF3495 at 0.830 kb on - strand, within GFF3495 at 0.830 kb on - strand, within GFF3495 at 1.179 kb on + strand at 1.204 kb on - strand at 1.405 kb on - strand, within GFF3496 at 1.460 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.551 kb on + strand, within GFF3496 at 1.552 kb on - strand, within GFF3496 at 1.552 kb on - strand, within GFF3496 at 1.552 kb on - strand, within GFF3496 at 1.662 kb on + strand, within GFF3496 at 1.707 kb on + strand, within GFF3496 at 1.707 kb on + strand, within GFF3496 at 1.708 kb on - strand, within GFF3496 at 1.708 kb on - strand, within GFF3496 at 1.708 kb on - strand, within GFF3496 at 1.836 kb on + strand, within GFF3496 at 1.837 kb on - strand, within GFF3496 at 1.837 kb on - strand, within GFF3496 at 1.861 kb on - strand, within GFF3496 at 1.861 kb on - strand, within GFF3496 at 1.893 kb on + strand, within GFF3496 at 1.935 kb on + strand, within GFF3496 at 1.936 kb on - strand, within GFF3496 at 1.984 kb on - strand, within GFF3496 at 2.007 kb on + strand, within GFF3496
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 241 + -2.5 242 - -1.2 308 - GFF3495 0.10 -2.2 830 - GFF3495 0.73 -0.9 830 - GFF3495 0.73 -0.9 1,179 + +0.1 1,204 - -1.9 1,405 - GFF3496 0.18 -3.0 1,460 + GFF3496 0.21 +0.8 1,551 + GFF3496 0.26 -1.2 1,551 + GFF3496 0.26 -1.9 1,551 + GFF3496 0.26 +1.4 1,551 + GFF3496 0.26 +0.2 1,552 - GFF3496 0.26 +1.7 1,552 - GFF3496 0.26 +1.4 1,552 - GFF3496 0.26 +0.8 1,662 + GFF3496 0.32 -3.4 1,707 + GFF3496 0.34 -3.7 1,707 + GFF3496 0.34 +0.6 1,708 - GFF3496 0.34 -0.4 1,708 - GFF3496 0.34 +1.9 1,708 - GFF3496 0.34 -1.0 1,836 + GFF3496 0.41 +2.4 1,837 - GFF3496 0.41 +1.1 1,837 - GFF3496 0.41 -0.2 1,861 - GFF3496 0.42 -0.9 1,861 - GFF3496 0.42 -1.6 1,893 + GFF3496 0.44 -1.2 1,935 + GFF3496 0.46 +1.0 1,936 - GFF3496 0.46 +2.4 1,984 - GFF3496 0.48 +0.4 2,007 + GFF3496 0.50 +0.8
Or see this region's nucleotide sequence