Strain Fitness in Variovorax sp. SCN45 around GFF3483

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3481 and GFF3482 overlap by 4 nucleotidesGFF3482 and GFF3483 overlap by 4 nucleotidesGFF3483 and GFF3484 are separated by 67 nucleotides GFF3481 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,823 to 304,593 GFF3481 GFF3482 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 304,590 to 305,552 GFF3482 GFF3483 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 305,549 to 306,409 GFF3483 GFF3484 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 306,477 to 307,670 GFF3484 Position (kb) 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.692 kb on - strand, within GFF3482at 304.697 kb on - strand, within GFF3482at 304.697 kb on - strand, within GFF3482at 304.738 kb on + strand, within GFF3482at 304.738 kb on + strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.739 kb on - strand, within GFF3482at 304.906 kb on + strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 304.907 kb on - strand, within GFF3482at 305.053 kb on + strand, within GFF3482at 305.240 kb on - strand, within GFF3482at 305.240 kb on - strand, within GFF3482at 305.240 kb on - strand, within GFF3482at 305.251 kb on + strand, within GFF3482at 305.252 kb on - strand, within GFF3482at 305.314 kb on + strand, within GFF3482at 305.314 kb on + strand, within GFF3482at 305.314 kb on + strand, within GFF3482at 305.315 kb on - strand, within GFF3482at 305.315 kb on - strand, within GFF3482at 305.339 kb on - strand, within GFF3482at 305.389 kb on + strand, within GFF3482at 305.616 kb on + strandat 305.616 kb on + strandat 305.616 kb on + strandat 305.616 kb on + strandat 305.616 kb on + strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.617 kb on - strandat 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.646 kb on + strand, within GFF3483at 305.647 kb on - strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.649 kb on + strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.650 kb on - strand, within GFF3483at 305.745 kb on + strand, within GFF3483at 305.754 kb on + strand, within GFF3483at 305.754 kb on + strand, within GFF3483at 305.754 kb on + strand, within GFF3483at 305.755 kb on - strand, within GFF3483at 305.755 kb on - strand, within GFF3483at 305.755 kb on - strand, within GFF3483at 306.020 kb on + strand, within GFF3483at 306.084 kb on + strand, within GFF3483at 306.084 kb on + strand, within GFF3483at 306.085 kb on - strand, within GFF3483at 306.156 kb on + strand, within GFF3483at 306.157 kb on - strand, within GFF3483at 306.169 kb on - strand, within GFF3483at 306.277 kb on - strand, within GFF3483at 306.277 kb on - strand, within GFF3483at 306.378 kb on + strandat 306.379 kb on - strandat 306.379 kb on - strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.478 kb on + strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.479 kb on - strandat 306.571 kb on + strandat 306.571 kb on + strandat 306.571 kb on + strandat 306.571 kb on + strandat 306.572 kb on - strandat 306.572 kb on - strandat 306.572 kb on - strandat 306.572 kb on - strandat 306.572 kb on - strandat 306.727 kb on + strand, within GFF3484at 306.746 kb on - strand, within GFF3484at 306.746 kb on - strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.829 kb on + strand, within GFF3484at 306.830 kb on - strand, within GFF3484at 306.830 kb on - strand, within GFF3484at 306.830 kb on - strand, within GFF3484at 306.880 kb on + strand, within GFF3484at 306.880 kb on + strand, within GFF3484at 306.880 kb on + strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 306.881 kb on - strand, within GFF3484at 307.036 kb on + strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.037 kb on - strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.165 kb on + strand, within GFF3484at 307.166 kb on - strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.195 kb on + strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.196 kb on - strand, within GFF3484at 307.249 kb on + strand, within GFF3484at 307.249 kb on + strand, within GFF3484at 307.336 kb on + strand, within GFF3484at 307.337 kb on - strand, within GFF3484

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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304,692 - GFF3482 0.11 -2.8
304,697 - GFF3482 0.11 -0.1
304,697 - GFF3482 0.11 -0.1
304,738 + GFF3482 0.15 -1.3
304,738 + GFF3482 0.15 -2.4
304,739 - GFF3482 0.15 +0.2
304,739 - GFF3482 0.15 -0.2
304,739 - GFF3482 0.15 -0.6
304,739 - GFF3482 0.15 -0.2
304,739 - GFF3482 0.15 -0.6
304,739 - GFF3482 0.15 -0.7
304,906 + GFF3482 0.33 +0.8
304,907 - GFF3482 0.33 -0.1
304,907 - GFF3482 0.33 +1.6
304,907 - GFF3482 0.33 +0.9
304,907 - GFF3482 0.33 -2.7
305,053 + GFF3482 0.48 +0.8
305,240 - GFF3482 0.67 -0.6
305,240 - GFF3482 0.67 -0.7
305,240 - GFF3482 0.67 -0.2
305,251 + GFF3482 0.69 -0.7
305,252 - GFF3482 0.69 +0.6
305,314 + GFF3482 0.75 +1.1
305,314 + GFF3482 0.75 +1.4
305,314 + GFF3482 0.75 -0.4
305,315 - GFF3482 0.75 -2.4
305,315 - GFF3482 0.75 +0.3
305,339 - GFF3482 0.78 -0.6
305,389 + GFF3482 0.83 +0.2
305,616 + +0.8
305,616 + +1.2
305,616 + -1.3
305,616 + -1.3
305,616 + +2.3
305,617 - -0.2
305,617 - -0.2
305,617 - +0.6
305,617 - -0.5
305,617 - -0.7
305,617 - -1.7
305,617 - +0.7
305,617 - -0.6
305,617 - +1.0
305,646 + GFF3483 0.11 -0.9
305,646 + GFF3483 0.11 -3.2
305,646 + GFF3483 0.11 -2.6
305,646 + GFF3483 0.11 +1.1
305,646 + GFF3483 0.11 -1.0
305,647 - GFF3483 0.11 -0.0
305,649 + GFF3483 0.12 +1.7
305,649 + GFF3483 0.12 -1.1
305,649 + GFF3483 0.12 -1.5
305,649 + GFF3483 0.12 -0.9
305,650 - GFF3483 0.12 -3.0
305,650 - GFF3483 0.12 -2.2
305,650 - GFF3483 0.12 -0.6
305,650 - GFF3483 0.12 +1.2
305,650 - GFF3483 0.12 +0.6
305,650 - GFF3483 0.12 -1.1
305,650 - GFF3483 0.12 -2.2
305,745 + GFF3483 0.23 -1.3
305,754 + GFF3483 0.24 -0.2
305,754 + GFF3483 0.24 -1.6
305,754 + GFF3483 0.24 -2.8
305,755 - GFF3483 0.24 +1.6
305,755 - GFF3483 0.24 -1.2
305,755 - GFF3483 0.24 -0.6
306,020 + GFF3483 0.55 -3.2
306,084 + GFF3483 0.62 -0.7
306,084 + GFF3483 0.62 -0.4
306,085 - GFF3483 0.62 -0.8
306,156 + GFF3483 0.70 -0.5
306,157 - GFF3483 0.71 -0.6
306,169 - GFF3483 0.72 +0.1
306,277 - GFF3483 0.85 +0.3
306,277 - GFF3483 0.85 -2.5
306,378 + -1.4
306,379 - -1.6
306,379 - +0.0
306,478 + +0.3
306,478 + +0.0
306,478 + -2.7
306,478 + +1.2
306,478 + -2.1
306,478 + -0.9
306,478 + +1.3
306,478 + -0.2
306,478 + +0.6
306,479 - -0.7
306,479 - +0.3
306,479 - -0.7
306,479 - -1.7
306,479 - -1.1
306,479 - +0.5
306,479 - -0.4
306,479 - -1.7
306,571 + -0.6
306,571 + -3.5
306,571 + +1.8
306,571 + +0.5
306,572 - +0.2
306,572 - +2.1
306,572 - +0.2
306,572 - -1.3
306,572 - +1.3
306,727 + GFF3484 0.21 -2.6
306,746 - GFF3484 0.23 +1.9
306,746 - GFF3484 0.23 +0.3
306,829 + GFF3484 0.29 -3.2
306,829 + GFF3484 0.29 +0.8
306,829 + GFF3484 0.29 -2.2
306,829 + GFF3484 0.29 -2.1
306,829 + GFF3484 0.29 +1.3
306,830 - GFF3484 0.30 +0.2
306,830 - GFF3484 0.30 -0.5
306,830 - GFF3484 0.30 -0.9
306,880 + GFF3484 0.34 -1.4
306,880 + GFF3484 0.34 +0.3
306,880 + GFF3484 0.34 -1.1
306,881 - GFF3484 0.34 -2.2
306,881 - GFF3484 0.34 -0.9
306,881 - GFF3484 0.34 -0.4
306,881 - GFF3484 0.34 -0.9
306,881 - GFF3484 0.34 -2.6
306,881 - GFF3484 0.34 -0.2
307,036 + GFF3484 0.47 -0.5
307,037 - GFF3484 0.47 -1.1
307,037 - GFF3484 0.47 +0.3
307,037 - GFF3484 0.47 -1.0
307,037 - GFF3484 0.47 +0.3
307,165 + GFF3484 0.58 +0.9
307,165 + GFF3484 0.58 -0.6
307,165 + GFF3484 0.58 +1.6
307,165 + GFF3484 0.58 -1.5
307,166 - GFF3484 0.58 -3.3
307,195 + GFF3484 0.60 -1.3
307,195 + GFF3484 0.60 +0.5
307,195 + GFF3484 0.60 +0.3
307,195 + GFF3484 0.60 -1.1
307,195 + GFF3484 0.60 -3.2
307,196 - GFF3484 0.60 -0.2
307,196 - GFF3484 0.60 -1.8
307,196 - GFF3484 0.60 +1.6
307,196 - GFF3484 0.60 -1.9
307,196 - GFF3484 0.60 -0.5
307,196 - GFF3484 0.60 +1.0
307,196 - GFF3484 0.60 -0.9
307,249 + GFF3484 0.65 +0.3
307,249 + GFF3484 0.65 +1.4
307,336 + GFF3484 0.72 -0.7
307,337 - GFF3484 0.72 +0.8

Or see this region's nucleotide sequence