Strain Fitness in Variovorax sp. SCN45 around GFF3307

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3305 and GFF3306 overlap by 20 nucleotidesGFF3306 and GFF3307 are separated by 19 nucleotidesGFF3307 and GFF3308 are separated by 176 nucleotides GFF3305 - hypothetical protein, at 129,055 to 129,624 GFF3305 GFF3306 - hypothetical protein, at 129,605 to 130,534 GFF3306 GFF3307 - FIG01161751: hypothetical protein, at 130,554 to 132,650 GFF3307 GFF3308 - Inner membrane protein CreD, at 132,827 to 134,290 GFF3308 Position (kb) 130 131 132 133Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 130.077 kb on + strand, within GFF3306at 130.077 kb on + strand, within GFF3306at 130.077 kb on + strand, within GFF3306at 130.077 kb on + strand, within GFF3306at 130.077 kb on + strand, within GFF3306at 130.077 kb on + strand, within GFF3306at 130.077 kb on + strand, within GFF3306at 130.078 kb on - strand, within GFF3306at 130.078 kb on - strand, within GFF3306at 130.078 kb on - strand, within GFF3306at 130.786 kb on + strand, within GFF3307at 130.786 kb on + strand, within GFF3307at 130.787 kb on - strand, within GFF3307at 130.787 kb on - strand, within GFF3307at 130.787 kb on - strand, within GFF3307at 130.804 kb on + strand, within GFF3307at 130.804 kb on + strand, within GFF3307at 130.804 kb on + strand, within GFF3307at 130.804 kb on + strand, within GFF3307at 130.804 kb on + strand, within GFF3307at 130.805 kb on - strand, within GFF3307at 130.805 kb on - strand, within GFF3307at 130.805 kb on - strand, within GFF3307at 130.961 kb on - strand, within GFF3307at 131.083 kb on + strand, within GFF3307at 131.084 kb on - strand, within GFF3307at 131.332 kb on + strand, within GFF3307at 131.332 kb on + strand, within GFF3307at 131.389 kb on + strand, within GFF3307at 131.389 kb on + strand, within GFF3307at 131.390 kb on - strand, within GFF3307at 131.390 kb on - strand, within GFF3307at 131.390 kb on - strand, within GFF3307at 131.390 kb on - strand, within GFF3307at 131.390 kb on - strand, within GFF3307at 131.437 kb on + strand, within GFF3307at 131.438 kb on - strand, within GFF3307at 131.644 kb on + strand, within GFF3307at 131.644 kb on + strand, within GFF3307at 131.644 kb on + strand, within GFF3307at 131.644 kb on + strand, within GFF3307at 131.644 kb on + strand, within GFF3307at 131.645 kb on - strand, within GFF3307at 131.645 kb on - strand, within GFF3307at 131.645 kb on - strand, within GFF3307at 131.645 kb on - strand, within GFF3307at 131.737 kb on + strand, within GFF3307at 131.737 kb on + strand, within GFF3307at 131.737 kb on + strand, within GFF3307at 131.737 kb on + strand, within GFF3307at 131.737 kb on + strand, within GFF3307at 131.737 kb on + strand, within GFF3307at 131.737 kb on + strand, within GFF3307at 131.738 kb on - strand, within GFF3307at 131.738 kb on - strand, within GFF3307at 132.022 kb on + strand, within GFF3307at 132.058 kb on + strand, within GFF3307at 132.058 kb on + strand, within GFF3307at 132.058 kb on + strand, within GFF3307at 132.058 kb on + strand, within GFF3307at 132.059 kb on - strand, within GFF3307at 132.059 kb on - strand, within GFF3307at 132.092 kb on - strand, within GFF3307at 132.211 kb on + strand, within GFF3307at 132.212 kb on - strand, within GFF3307at 132.212 kb on - strand, within GFF3307at 132.212 kb on - strand, within GFF3307at 132.319 kb on + strand, within GFF3307at 132.319 kb on + strand, within GFF3307at 132.320 kb on - strand, within GFF3307at 132.355 kb on + strand, within GFF3307at 132.355 kb on + strand, within GFF3307at 132.355 kb on + strand, within GFF3307at 132.356 kb on - strand, within GFF3307at 132.356 kb on - strand, within GFF3307at 132.356 kb on - strand, within GFF3307at 132.356 kb on - strand, within GFF3307at 132.467 kb on - strandat 132.467 kb on - strandat 132.989 kb on + strand, within GFF3308at 132.989 kb on + strand, within GFF3308at 132.989 kb on + strand, within GFF3308at 132.989 kb on + strand, within GFF3308at 132.989 kb on + strand, within GFF3308at 132.989 kb on + strand, within GFF3308at 132.989 kb on + strand, within GFF3308at 132.989 kb on + strand, within GFF3308at 132.990 kb on - strand, within GFF3308at 132.990 kb on - strand, within GFF3308at 132.990 kb on - strand, within GFF3308at 133.034 kb on + strand, within GFF3308at 133.034 kb on + strand, within GFF3308at 133.035 kb on - strand, within GFF3308at 133.199 kb on + strand, within GFF3308at 133.199 kb on + strand, within GFF3308at 133.200 kb on - strand, within GFF3308at 133.200 kb on - strand, within GFF3308

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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130,077 + GFF3306 0.51 -2.3
130,077 + GFF3306 0.51 -1.3
130,077 + GFF3306 0.51 -1.1
130,077 + GFF3306 0.51 -1.7
130,077 + GFF3306 0.51 -3.4
130,077 + GFF3306 0.51 +3.1
130,077 + GFF3306 0.51 -1.2
130,078 - GFF3306 0.51 -1.0
130,078 - GFF3306 0.51 +1.3
130,078 - GFF3306 0.51 -1.0
130,786 + GFF3307 0.11 +2.6
130,786 + GFF3307 0.11 -1.7
130,787 - GFF3307 0.11 -1.5
130,787 - GFF3307 0.11 +1.3
130,787 - GFF3307 0.11 -1.0
130,804 + GFF3307 0.12 -0.6
130,804 + GFF3307 0.12 -0.3
130,804 + GFF3307 0.12 -0.1
130,804 + GFF3307 0.12 +1.5
130,804 + GFF3307 0.12 -0.1
130,805 - GFF3307 0.12 +0.6
130,805 - GFF3307 0.12 -2.3
130,805 - GFF3307 0.12 -1.0
130,961 - GFF3307 0.19 -0.0
131,083 + GFF3307 0.25 -0.1
131,084 - GFF3307 0.25 -1.0
131,332 + GFF3307 0.37 +0.8
131,332 + GFF3307 0.37 -2.5
131,389 + GFF3307 0.40 +0.9
131,389 + GFF3307 0.40 +1.6
131,390 - GFF3307 0.40 +0.9
131,390 - GFF3307 0.40 +0.8
131,390 - GFF3307 0.40 -1.8
131,390 - GFF3307 0.40 +0.5
131,390 - GFF3307 0.40 -0.8
131,437 + GFF3307 0.42 -1.4
131,438 - GFF3307 0.42 -1.4
131,644 + GFF3307 0.52 -0.9
131,644 + GFF3307 0.52 -2.2
131,644 + GFF3307 0.52 -1.1
131,644 + GFF3307 0.52 +0.0
131,644 + GFF3307 0.52 -1.0
131,645 - GFF3307 0.52 -0.1
131,645 - GFF3307 0.52 +2.1
131,645 - GFF3307 0.52 -2.9
131,645 - GFF3307 0.52 -1.9
131,737 + GFF3307 0.56 -0.6
131,737 + GFF3307 0.56 +0.1
131,737 + GFF3307 0.56 +0.3
131,737 + GFF3307 0.56 +2.4
131,737 + GFF3307 0.56 -0.6
131,737 + GFF3307 0.56 +1.7
131,737 + GFF3307 0.56 -0.3
131,738 - GFF3307 0.56 +0.7
131,738 - GFF3307 0.56 +1.1
132,022 + GFF3307 0.70 -1.2
132,058 + GFF3307 0.72 +1.0
132,058 + GFF3307 0.72 -1.3
132,058 + GFF3307 0.72 +0.6
132,058 + GFF3307 0.72 -0.1
132,059 - GFF3307 0.72 -1.3
132,059 - GFF3307 0.72 -2.2
132,092 - GFF3307 0.73 +0.6
132,211 + GFF3307 0.79 +1.7
132,212 - GFF3307 0.79 -1.1
132,212 - GFF3307 0.79 +1.6
132,212 - GFF3307 0.79 -0.2
132,319 + GFF3307 0.84 +1.6
132,319 + GFF3307 0.84 -1.7
132,320 - GFF3307 0.84 -1.0
132,355 + GFF3307 0.86 -0.4
132,355 + GFF3307 0.86 +0.3
132,355 + GFF3307 0.86 -1.8
132,356 - GFF3307 0.86 -1.8
132,356 - GFF3307 0.86 -0.2
132,356 - GFF3307 0.86 +0.4
132,356 - GFF3307 0.86 -2.5
132,467 - +2.5
132,467 - -0.1
132,989 + GFF3308 0.11 -1.6
132,989 + GFF3308 0.11 -2.7
132,989 + GFF3308 0.11 -0.0
132,989 + GFF3308 0.11 -2.0
132,989 + GFF3308 0.11 +0.3
132,989 + GFF3308 0.11 +1.2
132,989 + GFF3308 0.11 +1.4
132,989 + GFF3308 0.11 -1.5
132,990 - GFF3308 0.11 -2.7
132,990 - GFF3308 0.11 -0.4
132,990 - GFF3308 0.11 -1.0
133,034 + GFF3308 0.14 -0.0
133,034 + GFF3308 0.14 -0.4
133,035 - GFF3308 0.14 +1.6
133,199 + GFF3308 0.25 -1.9
133,199 + GFF3308 0.25 -1.1
133,200 - GFF3308 0.25 +0.3
133,200 - GFF3308 0.25 +0.1

Or see this region's nucleotide sequence