Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3276 and GFF3277 overlap by 4 nucleotides GFF3277 and GFF3278 overlap by 4 nucleotides GFF3278 and GFF3279 are separated by 101 nucleotides GFF3279 and GFF3280 are separated by 342 nucleotides
GFF3276 - Inner membrane protein translocase and chaperone YidC, long form, at 96,353 to 98,038
GFF3276
GFF3277 - Membrane protein insertion efficiency factor YidD, at 98,035 to 98,322
GFF3277
GFF3278 - Ribonuclease P protein component (EC 3.1.26.5), at 98,319 to 98,741
GFF3278
GFF3279 - LSU ribosomal protein L34p, at 98,843 to 98,977
GFF3279
GFF3280 - Chromosomal replication initiator protein DnaA, at 99,320 to 100,699
GFF3280
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.180 kb on + strand, within GFF3277 at 98.180 kb on + strand, within GFF3277 at 98.180 kb on + strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.181 kb on - strand, within GFF3277 at 98.226 kb on - strand, within GFF3277 at 98.288 kb on + strand, within GFF3277 at 98.289 kb on - strand, within GFF3277 at 98.289 kb on - strand, within GFF3277 at 98.289 kb on - strand, within GFF3277 at 98.289 kb on - strand, within GFF3277 at 99.234 kb on - strand at 99.234 kb on - strand at 99.234 kb on - strand at 99.234 kb on - strand at 99.234 kb on - strand at 99.234 kb on - strand at 99.234 kb on - strand at 99.271 kb on + strand at 99.271 kb on + strand at 99.271 kb on + strand at 99.271 kb on + strand at 99.275 kb on + strand at 99.275 kb on + strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.276 kb on - strand at 99.277 kb on + strand at 99.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 98,180 + GFF3277 0.50 +0.0 98,180 + GFF3277 0.50 +1.6 98,180 + GFF3277 0.50 +1.6 98,181 - GFF3277 0.51 -0.9 98,181 - GFF3277 0.51 -1.9 98,181 - GFF3277 0.51 -2.0 98,181 - GFF3277 0.51 -0.3 98,181 - GFF3277 0.51 +2.6 98,181 - GFF3277 0.51 -1.8 98,181 - GFF3277 0.51 -0.2 98,181 - GFF3277 0.51 -1.9 98,181 - GFF3277 0.51 +1.4 98,181 - GFF3277 0.51 -3.3 98,181 - GFF3277 0.51 +1.6 98,226 - GFF3277 0.66 -1.6 98,288 + GFF3277 0.88 +0.6 98,289 - GFF3277 0.88 -1.8 98,289 - GFF3277 0.88 -0.8 98,289 - GFF3277 0.88 +0.4 98,289 - GFF3277 0.88 -1.2 99,234 - +0.5 99,234 - -0.4 99,234 - -0.2 99,234 - -2.0 99,234 - +0.5 99,234 - +1.6 99,234 - +2.6 99,271 + -1.0 99,271 + +1.6 99,271 + +1.6 99,271 + +2.6 99,275 + +2.6 99,275 + +1.0 99,276 - +2.6 99,276 - -0.8 99,276 - +0.6 99,276 - -0.2 99,276 - +2.6 99,276 - -1.1 99,276 - -2.0 99,276 - -0.4 99,276 - -0.7 99,276 - +2.6 99,276 - +1.0 99,276 - +2.6 99,277 + +1.0 99,277 + +1.6
Or see this region's nucleotide sequence