Strain Fitness in Variovorax sp. SCN45 around GFF315

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF314 and GFF315 overlap by 1 nucleotidesGFF315 and GFF316 are separated by 16 nucleotidesGFF316 and GFF317 are separated by 5 nucleotides GFF314 - Acyltransferase, at 347,153 to 348,175 GFF314 GFF315 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase, at 348,175 to 349,887 GFF315 GFF316 - Transmembrane protein, at 349,904 to 350,548 GFF316 GFF317 - Acyl carrier protein, at 350,554 to 350,865 GFF317 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.332 kb on - strand, within GFF314at 347.332 kb on - strand, within GFF314at 347.349 kb on + strand, within GFF314at 347.652 kb on + strand, within GFF314at 347.652 kb on + strand, within GFF314at 347.653 kb on - strand, within GFF314at 347.653 kb on - strand, within GFF314at 347.835 kb on + strand, within GFF314at 347.835 kb on + strand, within GFF314at 347.836 kb on - strand, within GFF314at 347.925 kb on + strand, within GFF314at 347.926 kb on - strand, within GFF314at 347.926 kb on - strand, within GFF314at 347.970 kb on + strand, within GFF314at 347.970 kb on + strand, within GFF314at 347.971 kb on - strand, within GFF314at 348.248 kb on - strandat 348.248 kb on - strandat 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.764 kb on + strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 348.765 kb on - strand, within GFF315at 349.031 kb on + strand, within GFF315at 349.031 kb on + strand, within GFF315at 349.031 kb on + strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.032 kb on - strand, within GFF315at 349.301 kb on + strand, within GFF315at 349.301 kb on + strand, within GFF315at 349.301 kb on + strand, within GFF315at 349.301 kb on + strand, within GFF315at 349.301 kb on + strand, within GFF315at 349.301 kb on + strand, within GFF315at 349.302 kb on - strand, within GFF315at 349.302 kb on - strand, within GFF315at 349.302 kb on - strand, within GFF315at 349.302 kb on - strand, within GFF315at 349.302 kb on - strand, within GFF315at 349.302 kb on - strand, within GFF315at 349.712 kb on + strand, within GFF315at 349.713 kb on - strand, within GFF315at 349.944 kb on + strandat 349.944 kb on + strandat 349.944 kb on + strandat 349.944 kb on + strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.945 kb on - strandat 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.975 kb on + strand, within GFF316at 349.976 kb on - strand, within GFF316at 349.976 kb on - strand, within GFF316at 349.976 kb on - strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.097 kb on + strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.098 kb on - strand, within GFF316at 350.133 kb on + strand, within GFF316at 350.133 kb on + strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.134 kb on - strand, within GFF316at 350.166 kb on + strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.167 kb on - strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.298 kb on + strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.299 kb on - strand, within GFF316at 350.502 kb on + strandat 350.502 kb on + strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.503 kb on - strandat 350.559 kb on + strandat 350.560 kb on - strandat 350.560 kb on - strandat 350.720 kb on + strand, within GFF317at 350.721 kb on - strand, within GFF317at 350.721 kb on - strand, within GFF317at 350.851 kb on + strandat 350.851 kb on + strandat 350.851 kb on + strandat 350.852 kb on - strandat 350.852 kb on - strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.881 kb on - strandat 350.881 kb on - strandat 350.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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347,199 + -0.1
347,199 + -2.0
347,199 + +0.6
347,199 + -0.5
347,199 + +0.3
347,199 + -1.2
347,200 - -0.2
347,200 - +0.5
347,200 - +0.1
347,238 + +0.3
347,238 + +0.1
347,238 + +0.4
347,238 + -1.0
347,238 + -2.0
347,238 + -0.6
347,238 + -0.9
347,239 - +1.1
347,239 - -0.4
347,239 - +0.2
347,239 - -1.9
347,239 - -0.2
347,239 - +1.8
347,239 - +1.8
347,239 - -1.0
347,239 - +0.4
347,239 - -0.5
347,332 - GFF314 0.17 -1.9
347,332 - GFF314 0.17 +2.2
347,349 + GFF314 0.19 -2.5
347,652 + GFF314 0.49 +1.8
347,652 + GFF314 0.49 +1.0
347,653 - GFF314 0.49 +0.1
347,653 - GFF314 0.49 -1.0
347,835 + GFF314 0.67 +1.3
347,835 + GFF314 0.67 -2.2
347,836 - GFF314 0.67 -1.7
347,925 + GFF314 0.75 -1.2
347,926 - GFF314 0.76 +2.0
347,926 - GFF314 0.76 +1.6
347,970 + GFF314 0.80 -0.9
347,970 + GFF314 0.80 +0.2
347,971 - GFF314 0.80 +3.2
348,248 - -0.4
348,248 - +1.6
348,764 + GFF315 0.34 +0.6
348,764 + GFF315 0.34 -0.2
348,764 + GFF315 0.34 +1.0
348,764 + GFF315 0.34 +0.0
348,764 + GFF315 0.34 +4.0
348,764 + GFF315 0.34 -0.4
348,764 + GFF315 0.34 +3.0
348,764 + GFF315 0.34 +0.6
348,764 + GFF315 0.34 -2.7
348,765 - GFF315 0.34 -0.7
348,765 - GFF315 0.34 -0.5
348,765 - GFF315 0.34 -1.3
348,765 - GFF315 0.34 -0.2
348,765 - GFF315 0.34 +2.1
348,765 - GFF315 0.34 -1.6
349,031 + GFF315 0.50 -1.3
349,031 + GFF315 0.50 -1.3
349,031 + GFF315 0.50 -1.2
349,032 - GFF315 0.50 +2.5
349,032 - GFF315 0.50 +2.4
349,032 - GFF315 0.50 +1.3
349,032 - GFF315 0.50 +0.2
349,032 - GFF315 0.50 -0.7
349,032 - GFF315 0.50 -1.6
349,032 - GFF315 0.50 -1.5
349,032 - GFF315 0.50 -0.4
349,301 + GFF315 0.66 -1.2
349,301 + GFF315 0.66 -1.3
349,301 + GFF315 0.66 -2.7
349,301 + GFF315 0.66 +0.9
349,301 + GFF315 0.66 -1.2
349,301 + GFF315 0.66 -2.3
349,302 - GFF315 0.66 -1.6
349,302 - GFF315 0.66 -0.4
349,302 - GFF315 0.66 -0.2
349,302 - GFF315 0.66 -1.1
349,302 - GFF315 0.66 +1.2
349,302 - GFF315 0.66 -2.0
349,712 + GFF315 0.90 +0.5
349,713 - GFF315 0.90 -1.7
349,944 + -1.6
349,944 + -2.7
349,944 + -0.2
349,944 + +0.2
349,945 - +0.4
349,945 - -0.2
349,945 - +0.0
349,945 - +1.3
349,945 - +0.4
349,945 - +0.5
349,945 - -1.6
349,975 + GFF316 0.11 +0.8
349,975 + GFF316 0.11 -0.4
349,975 + GFF316 0.11 -1.2
349,975 + GFF316 0.11 +0.5
349,975 + GFF316 0.11 -0.2
349,975 + GFF316 0.11 -0.6
349,975 + GFF316 0.11 +1.4
349,976 - GFF316 0.11 +1.0
349,976 - GFF316 0.11 -1.9
349,976 - GFF316 0.11 +0.7
350,097 + GFF316 0.30 -0.5
350,097 + GFF316 0.30 +2.2
350,097 + GFF316 0.30 +0.2
350,097 + GFF316 0.30 -1.0
350,097 + GFF316 0.30 +1.1
350,097 + GFF316 0.30 -2.3
350,097 + GFF316 0.30 +0.5
350,097 + GFF316 0.30 -2.1
350,098 - GFF316 0.30 -1.0
350,098 - GFF316 0.30 +0.3
350,098 - GFF316 0.30 -0.2
350,098 - GFF316 0.30 -2.3
350,098 - GFF316 0.30 +0.4
350,098 - GFF316 0.30 -0.7
350,098 - GFF316 0.30 +2.4
350,133 + GFF316 0.36 -1.9
350,133 + GFF316 0.36 +0.5
350,134 - GFF316 0.36 -2.1
350,134 - GFF316 0.36 -1.3
350,134 - GFF316 0.36 -0.2
350,134 - GFF316 0.36 -1.0
350,134 - GFF316 0.36 -0.1
350,166 + GFF316 0.41 -0.6
350,167 - GFF316 0.41 -3.5
350,167 - GFF316 0.41 -0.7
350,167 - GFF316 0.41 -0.7
350,298 + GFF316 0.61 -0.7
350,298 + GFF316 0.61 -0.3
350,298 + GFF316 0.61 -1.2
350,298 + GFF316 0.61 -3.4
350,298 + GFF316 0.61 +0.0
350,298 + GFF316 0.61 -1.2
350,298 + GFF316 0.61 -0.7
350,298 + GFF316 0.61 -1.9
350,298 + GFF316 0.61 -0.3
350,298 + GFF316 0.61 +0.2
350,298 + GFF316 0.61 +0.1
350,298 + GFF316 0.61 +0.5
350,299 - GFF316 0.61 -0.7
350,299 - GFF316 0.61 +1.1
350,299 - GFF316 0.61 +2.3
350,299 - GFF316 0.61 +2.7
350,299 - GFF316 0.61 -0.2
350,299 - GFF316 0.61 -1.4
350,299 - GFF316 0.61 +0.9
350,299 - GFF316 0.61 -2.2
350,299 - GFF316 0.61 -0.6
350,299 - GFF316 0.61 +2.4
350,299 - GFF316 0.61 -1.3
350,299 - GFF316 0.61 -1.3
350,299 - GFF316 0.61 -1.7
350,502 + +0.8
350,502 + -0.9
350,503 - -0.7
350,503 - +1.6
350,503 - -1.7
350,503 - -2.4
350,503 - -0.1
350,503 - -0.5
350,503 - -3.2
350,503 - -1.6
350,559 + +1.2
350,560 - -0.8
350,560 - +0.2
350,720 + GFF317 0.53 +1.7
350,721 - GFF317 0.54 -0.9
350,721 - GFF317 0.54 +0.4
350,851 + -1.3
350,851 + +1.3
350,851 + +0.6
350,852 - +0.6
350,852 - -0.5
350,880 + +0.1
350,880 + -2.2
350,880 + +0.7
350,880 + -0.5
350,881 - +1.1
350,881 - -2.6
350,881 - -0.8

Or see this region's nucleotide sequence