Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3039 and GFF3040 are separated by 181 nucleotides GFF3040 and GFF3041 are separated by 57 nucleotides
GFF3039 - Two-component transcriptional response regulator, LuxR family, at 471,425 to 472,204
GFF3039
GFF3040 - hypothetical protein, at 472,386 to 474,662
GFF3040
GFF3041 - Outer membrane porin protein 32 precursor, at 474,720 to 475,877
GFF3041
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 471.465 kb on + strand at 471.466 kb on - strand at 471.466 kb on - strand at 471.466 kb on - strand at 471.741 kb on + strand, within GFF3039 at 471.876 kb on + strand, within GFF3039 at 471.876 kb on + strand, within GFF3039 at 471.877 kb on - strand, within GFF3039 at 471.877 kb on - strand, within GFF3039 at 472.032 kb on + strand, within GFF3039 at 472.204 kb on + strand at 472.204 kb on + strand at 472.205 kb on - strand at 472.258 kb on - strand at 473.135 kb on + strand, within GFF3040 at 473.135 kb on + strand, within GFF3040 at 473.135 kb on + strand, within GFF3040 at 473.381 kb on - strand, within GFF3040 at 473.384 kb on + strand, within GFF3040 at 473.384 kb on + strand, within GFF3040 at 473.385 kb on - strand, within GFF3040 at 473.385 kb on - strand, within GFF3040 at 473.703 kb on + strand, within GFF3040 at 474.459 kb on + strand at 474.460 kb on - strand at 474.664 kb on - strand at 474.910 kb on + strand, within GFF3041 at 475.406 kb on - strand, within GFF3041 at 475.406 kb on - strand, within GFF3041 at 475.406 kb on - strand, within GFF3041
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 471,465 + -0.2 471,466 - -2.1 471,466 - -2.7 471,466 - +3.3 471,741 + GFF3039 0.41 -2.7 471,876 + GFF3039 0.58 -0.2 471,876 + GFF3039 0.58 -0.7 471,877 - GFF3039 0.58 -0.2 471,877 - GFF3039 0.58 +0.5 472,032 + GFF3039 0.78 +0.1 472,204 + -0.1 472,204 + +0.3 472,205 - +0.1 472,258 - -1.7 473,135 + GFF3040 0.33 +1.4 473,135 + GFF3040 0.33 -1.5 473,135 + GFF3040 0.33 +1.4 473,381 - GFF3040 0.44 +0.5 473,384 + GFF3040 0.44 +0.0 473,384 + GFF3040 0.44 +0.5 473,385 - GFF3040 0.44 +0.3 473,385 - GFF3040 0.44 +0.4 473,703 + GFF3040 0.58 -3.2 474,459 + -1.1 474,460 - -1.7 474,664 - -2.2 474,910 + GFF3041 0.16 -0.2 475,406 - GFF3041 0.59 -1.5 475,406 - GFF3041 0.59 -0.5 475,406 - GFF3041 0.59 -1.4
Or see this region's nucleotide sequence