Strain Fitness in Variovorax sp. SCN45 around GFF288

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF287 and GFF288 are separated by 181 nucleotidesGFF288 and GFF289 are separated by 387 nucleotides GFF287 - hypothetical protein, at 322,045 to 323,301 GFF287 GFF288 - no description, at 323,483 to 323,812 GFF288 GFF289 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1, at 324,200 to 325,045 GFF289 Position (kb) 323 324Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 322.568 kb on + strand, within GFF287at 322.569 kb on - strand, within GFF287at 322.569 kb on - strand, within GFF287at 322.719 kb on - strand, within GFF287at 323.196 kb on - strandat 323.196 kb on - strandat 323.196 kb on - strandat 323.296 kb on + strandat 323.360 kb on + strandat 323.360 kb on + strandat 323.360 kb on + strandat 323.360 kb on + strandat 323.360 kb on + strandat 323.360 kb on + strandat 323.360 kb on + strandat 323.360 kb on + strandat 323.361 kb on - strandat 323.361 kb on - strandat 323.361 kb on - strandat 323.361 kb on - strandat 323.361 kb on - strandat 323.377 kb on - strandat 323.386 kb on - strandat 323.387 kb on - strandat 323.410 kb on + strandat 323.421 kb on + strandat 323.479 kb on + strandat 323.479 kb on + strandat 323.479 kb on + strandat 323.479 kb on + strandat 323.479 kb on + strandat 323.479 kb on + strandat 323.509 kb on + strandat 323.509 kb on + strandat 323.509 kb on + strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.510 kb on - strandat 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.526 kb on + strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.527 kb on - strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.538 kb on + strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.539 kb on - strand, within GFF288at 323.689 kb on + strand, within GFF288at 323.689 kb on + strand, within GFF288at 323.690 kb on - strand, within GFF288at 323.690 kb on - strand, within GFF288at 323.690 kb on - strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.691 kb on + strand, within GFF288at 323.692 kb on - strand, within GFF288at 323.692 kb on - strand, within GFF288at 323.692 kb on - strand, within GFF288at 323.692 kb on - strand, within GFF288at 323.692 kb on - strand, within GFF288at 323.692 kb on - strand, within GFF288at 323.812 kb on + strandat 323.812 kb on + strandat 323.812 kb on + strandat 323.812 kb on + strandat 323.812 kb on + strandat 323.812 kb on + strandat 323.812 kb on + strandat 323.812 kb on + strandat 323.812 kb on + strandat 323.813 kb on - strandat 323.813 kb on - strandat 323.813 kb on - strandat 323.813 kb on - strandat 323.813 kb on - strandat 323.813 kb on - strandat 323.813 kb on - strandat 323.813 kb on - strandat 323.813 kb on - strandat 324.017 kb on + strandat 324.017 kb on + strandat 324.017 kb on + strandat 324.018 kb on - strandat 324.079 kb on - strandat 324.079 kb on - strandat 324.079 kb on - strandat 324.079 kb on - strandat 324.196 kb on - strandat 324.204 kb on - strandat 324.204 kb on - strandat 324.204 kb on - strandat 324.578 kb on + strand, within GFF289at 324.578 kb on + strand, within GFF289at 324.578 kb on + strand, within GFF289at 324.578 kb on + strand, within GFF289at 324.579 kb on - strand, within GFF289at 324.579 kb on - strand, within GFF289at 324.579 kb on - strand, within GFF289at 324.579 kb on - strand, within GFF289at 324.579 kb on - strand, within GFF289

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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322,568 + GFF287 0.42 +1.0
322,569 - GFF287 0.42 -0.5
322,569 - GFF287 0.42 -1.0
322,719 - GFF287 0.54 +1.3
323,196 - +0.1
323,196 - +0.2
323,196 - +1.1
323,296 + +0.5
323,360 + -0.8
323,360 + -0.9
323,360 + -3.0
323,360 + -1.6
323,360 + +0.8
323,360 + +0.0
323,360 + -1.4
323,360 + -1.9
323,361 - -0.7
323,361 - -2.1
323,361 - -2.0
323,361 - -2.6
323,361 - +0.9
323,377 - +0.8
323,386 - +2.3
323,387 - +1.2
323,410 + -0.0
323,421 + +2.5
323,479 + -0.4
323,479 + -1.0
323,479 + +2.4
323,479 + -0.2
323,479 + +3.6
323,479 + +0.7
323,509 + -1.0
323,509 + +1.2
323,509 + -0.3
323,510 - +1.4
323,510 - +0.2
323,510 - -1.3
323,510 - -0.7
323,510 - -1.3
323,510 - -3.2
323,510 - +0.1
323,510 - +1.1
323,510 - -1.8
323,526 + GFF288 0.13 +1.5
323,526 + GFF288 0.13 -0.1
323,526 + GFF288 0.13 +2.4
323,526 + GFF288 0.13 +1.9
323,526 + GFF288 0.13 -2.3
323,526 + GFF288 0.13 +1.1
323,526 + GFF288 0.13 -0.2
323,526 + GFF288 0.13 -0.7
323,526 + GFF288 0.13 +0.4
323,526 + GFF288 0.13 +1.2
323,526 + GFF288 0.13 +0.8
323,526 + GFF288 0.13 +0.8
323,527 - GFF288 0.13 -1.6
323,527 - GFF288 0.13 -0.6
323,527 - GFF288 0.13 -0.2
323,527 - GFF288 0.13 -0.2
323,527 - GFF288 0.13 +0.9
323,527 - GFF288 0.13 -0.6
323,527 - GFF288 0.13 -0.4
323,527 - GFF288 0.13 -0.8
323,527 - GFF288 0.13 +0.8
323,527 - GFF288 0.13 -0.2
323,527 - GFF288 0.13 +1.9
323,538 + GFF288 0.17 -0.2
323,538 + GFF288 0.17 -0.5
323,538 + GFF288 0.17 -0.2
323,538 + GFF288 0.17 -1.0
323,538 + GFF288 0.17 +0.7
323,538 + GFF288 0.17 -2.3
323,538 + GFF288 0.17 +1.8
323,538 + GFF288 0.17 -0.3
323,538 + GFF288 0.17 -0.5
323,538 + GFF288 0.17 -1.2
323,538 + GFF288 0.17 -0.5
323,538 + GFF288 0.17 +1.8
323,539 - GFF288 0.17 -0.8
323,539 - GFF288 0.17 -1.6
323,539 - GFF288 0.17 -1.8
323,539 - GFF288 0.17 -0.3
323,539 - GFF288 0.17 -2.5
323,539 - GFF288 0.17 +1.2
323,539 - GFF288 0.17 +0.9
323,539 - GFF288 0.17 +0.3
323,539 - GFF288 0.17 +0.4
323,539 - GFF288 0.17 -0.3
323,689 + GFF288 0.62 -0.2
323,689 + GFF288 0.62 -0.7
323,690 - GFF288 0.63 -1.6
323,690 - GFF288 0.63 +0.2
323,690 - GFF288 0.63 +0.1
323,691 + GFF288 0.63 +0.9
323,691 + GFF288 0.63 -2.1
323,691 + GFF288 0.63 -0.7
323,691 + GFF288 0.63 -0.3
323,691 + GFF288 0.63 -1.5
323,691 + GFF288 0.63 -1.9
323,691 + GFF288 0.63 +0.4
323,691 + GFF288 0.63 -2.3
323,691 + GFF288 0.63 -1.2
323,691 + GFF288 0.63 +0.4
323,692 - GFF288 0.63 +1.4
323,692 - GFF288 0.63 -0.8
323,692 - GFF288 0.63 -0.8
323,692 - GFF288 0.63 -0.3
323,692 - GFF288 0.63 -0.5
323,692 - GFF288 0.63 -2.4
323,812 + -0.8
323,812 + -1.2
323,812 + -1.0
323,812 + +0.8
323,812 + -0.4
323,812 + -2.1
323,812 + -3.8
323,812 + +0.6
323,812 + +0.4
323,813 - +0.5
323,813 - -0.6
323,813 - -0.2
323,813 - +0.2
323,813 - -1.2
323,813 - -1.5
323,813 - -1.3
323,813 - +3.0
323,813 - -2.1
324,017 + -3.7
324,017 + +1.8
324,017 + -1.8
324,018 - -2.1
324,079 - -0.2
324,079 - -1.0
324,079 - -0.4
324,079 - -0.2
324,196 - -0.6
324,204 - -0.3
324,204 - +0.8
324,204 - -2.7
324,578 + GFF289 0.45 +0.4
324,578 + GFF289 0.45 -0.9
324,578 + GFF289 0.45 -2.7
324,578 + GFF289 0.45 -2.2
324,579 - GFF289 0.45 +1.8
324,579 - GFF289 0.45 -1.0
324,579 - GFF289 0.45 -0.2
324,579 - GFF289 0.45 -1.5
324,579 - GFF289 0.45 -1.0

Or see this region's nucleotide sequence