Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2866 and GFF2867 overlap by 4 nucleotides GFF2867 and GFF2868 are separated by 24 nucleotides
GFF2866 - Uncharacterized MFS-type transporter, at 289,624 to 290,787
GFF2866
GFF2867 - DNA recombination protein RmuC, at 290,784 to 292,151
GFF2867
GFF2868 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215), at 292,176 to 293,162
GFF2868
Position (kb) 290
291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 289.910 kb on + strand, within GFF2866 at 289.910 kb on + strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 290.681 kb on + strand at 290.681 kb on + strand at 290.681 kb on + strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.965 kb on + strand, within GFF2867 at 290.966 kb on - strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.457 kb on + strand, within GFF2867 at 291.457 kb on + strand, within GFF2867 at 291.987 kb on + strand, within GFF2867 at 291.988 kb on - strand, within GFF2867 at 291.988 kb on - strand, within GFF2867 at 292.136 kb on + strand at 292.136 kb on + strand at 292.136 kb on + strand at 292.137 kb on - strand at 292.137 kb on - strand at 292.177 kb on + strand at 292.177 kb on + strand at 292.177 kb on + strand at 292.178 kb on - strand at 292.235 kb on - strand at 292.301 kb on + strand, within GFF2868 at 292.525 kb on + strand, within GFF2868 at 292.582 kb on + strand, within GFF2868 at 292.582 kb on + strand, within GFF2868 at 292.582 kb on + strand, within GFF2868 at 292.582 kb on + strand, within GFF2868 at 292.583 kb on - strand, within GFF2868 at 292.583 kb on - strand, within GFF2868 at 292.583 kb on - strand, within GFF2868 at 292.583 kb on - strand, within GFF2868 at 292.583 kb on - strand, within GFF2868 at 292.583 kb on - strand, within GFF2868 at 292.583 kb on - strand, within GFF2868 at 292.636 kb on + strand, within GFF2868 at 292.636 kb on + strand, within GFF2868 at 292.637 kb on - strand, within GFF2868 at 292.637 kb on - strand, within GFF2868 at 292.927 kb on + strand, within GFF2868 at 292.927 kb on + strand, within GFF2868 at 292.928 kb on - strand, within GFF2868 at 292.928 kb on - strand, within GFF2868 at 292.928 kb on - strand, within GFF2868
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 289,910 + GFF2866 0.25 +0.1 289,910 + GFF2866 0.25 -1.6 289,911 - GFF2866 0.25 +0.5 289,911 - GFF2866 0.25 -3.3 289,911 - GFF2866 0.25 +0.8 290,681 + +1.9 290,681 + +0.5 290,681 + -0.2 290,682 - -1.0 290,682 - -0.1 290,682 - +0.1 290,682 - +0.1 290,682 - +1.1 290,682 - -0.5 290,965 + GFF2867 0.13 +0.3 290,966 - GFF2867 0.13 +0.1 291,157 + GFF2867 0.27 -1.2 291,157 + GFF2867 0.27 -0.4 291,157 + GFF2867 0.27 -0.5 291,157 + GFF2867 0.27 -0.2 291,217 + GFF2867 0.32 +0.7 291,217 + GFF2867 0.32 -1.4 291,217 + GFF2867 0.32 -0.8 291,217 + GFF2867 0.32 +0.1 291,218 - GFF2867 0.32 +1.1 291,218 - GFF2867 0.32 +0.5 291,218 - GFF2867 0.32 -1.8 291,218 - GFF2867 0.32 -1.3 291,218 - GFF2867 0.32 +1.4 291,218 - GFF2867 0.32 -1.3 291,328 + GFF2867 0.40 +0.9 291,328 + GFF2867 0.40 +0.1 291,328 + GFF2867 0.40 -0.8 291,328 + GFF2867 0.40 +1.1 291,457 + GFF2867 0.49 -1.3 291,457 + GFF2867 0.49 -0.8 291,987 + GFF2867 0.88 -0.5 291,988 - GFF2867 0.88 -0.1 291,988 - GFF2867 0.88 -0.6 292,136 + -1.3 292,136 + -0.0 292,136 + -1.6 292,137 - -2.8 292,137 - -0.1 292,177 + +0.9 292,177 + -0.6 292,177 + -1.1 292,178 - -1.9 292,235 - -0.8 292,301 + GFF2868 0.13 -3.0 292,525 + GFF2868 0.35 -1.7 292,582 + GFF2868 0.41 -0.4 292,582 + GFF2868 0.41 -1.6 292,582 + GFF2868 0.41 -0.4 292,582 + GFF2868 0.41 -3.3 292,583 - GFF2868 0.41 -1.5 292,583 - GFF2868 0.41 -2.5 292,583 - GFF2868 0.41 +1.2 292,583 - GFF2868 0.41 +0.3 292,583 - GFF2868 0.41 -0.4 292,583 - GFF2868 0.41 -2.1 292,583 - GFF2868 0.41 -1.4 292,636 + GFF2868 0.47 +0.1 292,636 + GFF2868 0.47 -1.8 292,637 - GFF2868 0.47 -2.5 292,637 - GFF2868 0.47 -2.0 292,927 + GFF2868 0.76 -0.9 292,927 + GFF2868 0.76 +1.1 292,928 - GFF2868 0.76 +0.7 292,928 - GFF2868 0.76 +1.2 292,928 - GFF2868 0.76 -1.4
Or see this region's nucleotide sequence