Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2793 and GFF2794 overlap by 4 nucleotides GFF2794 and GFF2795 are separated by 27 nucleotides GFF2795 and GFF2796 are separated by 122 nucleotides
GFF2793 - Tricarboxylate transport protein TctC, at 224,081 to 225,073
GFF2793
GFF2794 - Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12), at 225,070 to 225,546
GFF2794
GFF2795 - no description, at 225,574 to 225,687
GFF2795
GFF2796 - Dihydrodipicolinate synthase family protein PP2639, at 225,810 to 226,706
GFF2796
Position (kb) 225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 224.389 kb on - strand, within GFF2793 at 224.391 kb on - strand, within GFF2793 at 224.522 kb on + strand, within GFF2793 at 224.522 kb on + strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.523 kb on - strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.624 kb on + strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.625 kb on - strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.852 kb on + strand, within GFF2793 at 224.853 kb on - strand, within GFF2793 at 224.853 kb on - strand, within GFF2793 at 224.853 kb on - strand, within GFF2793 at 224.855 kb on + strand, within GFF2793 at 224.855 kb on + strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.856 kb on - strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.903 kb on + strand, within GFF2793 at 224.904 kb on - strand, within GFF2793 at 224.904 kb on - strand, within GFF2793 at 224.904 kb on - strand, within GFF2793 at 224.981 kb on + strand at 224.982 kb on - strand at 224.982 kb on - strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.020 kb on + strand at 225.021 kb on - strand at 225.021 kb on - strand at 225.021 kb on - strand at 225.071 kb on + strand at 225.071 kb on + strand at 225.071 kb on + strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.194 kb on + strand, within GFF2794 at 225.194 kb on + strand, within GFF2794 at 225.194 kb on + strand, within GFF2794 at 225.194 kb on + strand, within GFF2794 at 225.195 kb on - strand, within GFF2794 at 225.195 kb on - strand, within GFF2794 at 225.195 kb on - strand, within GFF2794 at 225.381 kb on - strand, within GFF2794 at 225.381 kb on - strand, within GFF2794 at 225.568 kb on + strand at 225.569 kb on - strand at 225.569 kb on - strand at 225.834 kb on - strand at 225.834 kb on - strand at 226.155 kb on + strand, within GFF2796 at 226.155 kb on + strand, within GFF2796 at 226.155 kb on + strand, within GFF2796 at 226.155 kb on + strand, within GFF2796 at 226.155 kb on + strand, within GFF2796 at 226.155 kb on + strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.156 kb on - strand, within GFF2796 at 226.233 kb on + strand, within GFF2796 at 226.233 kb on + strand, within GFF2796 at 226.233 kb on + strand, within GFF2796 at 226.234 kb on - strand, within GFF2796 at 226.234 kb on - strand, within GFF2796 at 226.234 kb on - strand, within GFF2796 at 226.245 kb on + strand, within GFF2796 at 226.378 kb on + strand, within GFF2796 at 226.378 kb on + strand, within GFF2796 at 226.378 kb on + strand, within GFF2796 at 226.379 kb on - strand, within GFF2796 at 226.379 kb on - strand, within GFF2796
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 224,389 - GFF2793 0.31 -1.9 224,391 - GFF2793 0.31 -0.2 224,522 + GFF2793 0.44 -0.9 224,522 + GFF2793 0.44 -0.9 224,523 - GFF2793 0.45 +1.0 224,523 - GFF2793 0.45 -3.0 224,523 - GFF2793 0.45 -2.5 224,523 - GFF2793 0.45 -0.2 224,523 - GFF2793 0.45 -1.8 224,624 + GFF2793 0.55 -0.5 224,624 + GFF2793 0.55 +0.5 224,624 + GFF2793 0.55 +2.3 224,624 + GFF2793 0.55 +0.6 224,624 + GFF2793 0.55 +1.5 224,624 + GFF2793 0.55 -1.7 224,624 + GFF2793 0.55 -0.1 224,624 + GFF2793 0.55 -1.8 224,624 + GFF2793 0.55 -1.4 224,624 + GFF2793 0.55 -1.3 224,624 + GFF2793 0.55 +2.1 224,625 - GFF2793 0.55 +2.4 224,625 - GFF2793 0.55 -0.5 224,625 - GFF2793 0.55 +1.7 224,625 - GFF2793 0.55 -2.2 224,625 - GFF2793 0.55 -0.7 224,852 + GFF2793 0.78 -3.5 224,852 + GFF2793 0.78 +2.7 224,852 + GFF2793 0.78 -0.2 224,852 + GFF2793 0.78 +0.1 224,853 - GFF2793 0.78 -2.8 224,853 - GFF2793 0.78 +0.1 224,853 - GFF2793 0.78 -0.2 224,855 + GFF2793 0.78 -2.5 224,855 + GFF2793 0.78 -0.7 224,856 - GFF2793 0.78 +0.2 224,856 - GFF2793 0.78 +1.1 224,856 - GFF2793 0.78 -1.0 224,856 - GFF2793 0.78 +0.5 224,856 - GFF2793 0.78 -0.0 224,856 - GFF2793 0.78 -1.2 224,856 - GFF2793 0.78 +0.3 224,903 + GFF2793 0.83 -0.1 224,903 + GFF2793 0.83 -0.2 224,903 + GFF2793 0.83 +0.3 224,903 + GFF2793 0.83 -1.8 224,904 - GFF2793 0.83 +0.6 224,904 - GFF2793 0.83 -0.2 224,904 - GFF2793 0.83 +0.8 224,981 + +0.5 224,982 - -1.0 224,982 - -1.9 225,020 + -0.9 225,020 + -2.7 225,020 + -0.5 225,020 + +1.1 225,020 + -0.7 225,021 - +2.6 225,021 - -0.5 225,021 - -1.3 225,071 + -0.8 225,071 + +0.6 225,071 + -1.1 225,072 - +2.0 225,072 - -1.2 225,072 - +0.6 225,072 - -0.4 225,072 - -0.2 225,072 - +0.1 225,194 + GFF2794 0.26 -3.5 225,194 + GFF2794 0.26 -0.0 225,194 + GFF2794 0.26 +0.1 225,194 + GFF2794 0.26 +1.1 225,195 - GFF2794 0.26 -0.2 225,195 - GFF2794 0.26 +0.3 225,195 - GFF2794 0.26 +1.0 225,381 - GFF2794 0.65 +1.1 225,381 - GFF2794 0.65 -0.7 225,568 + -0.5 225,569 - -0.5 225,569 - -1.2 225,834 - -2.1 225,834 - -2.3 226,155 + GFF2796 0.38 -1.5 226,155 + GFF2796 0.38 +0.5 226,155 + GFF2796 0.38 -2.9 226,155 + GFF2796 0.38 -0.1 226,155 + GFF2796 0.38 -0.0 226,155 + GFF2796 0.38 -3.0 226,156 - GFF2796 0.39 +1.1 226,156 - GFF2796 0.39 +0.5 226,156 - GFF2796 0.39 +0.2 226,156 - GFF2796 0.39 -1.4 226,156 - GFF2796 0.39 +1.6 226,156 - GFF2796 0.39 -2.8 226,156 - GFF2796 0.39 -0.3 226,156 - GFF2796 0.39 +1.7 226,156 - GFF2796 0.39 -1.0 226,233 + GFF2796 0.47 -0.2 226,233 + GFF2796 0.47 -1.3 226,233 + GFF2796 0.47 +0.6 226,234 - GFF2796 0.47 -1.1 226,234 - GFF2796 0.47 +0.1 226,234 - GFF2796 0.47 -0.8 226,245 + GFF2796 0.48 +0.1 226,378 + GFF2796 0.63 -1.6 226,378 + GFF2796 0.63 -0.9 226,378 + GFF2796 0.63 -1.3 226,379 - GFF2796 0.63 +1.1 226,379 - GFF2796 0.63 +0.6
Or see this region's nucleotide sequence