Strain Fitness in Variovorax sp. SCN45 around GFF2723

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
154,762	+		GFF2722	0.13	-3.6
154,762	+		GFF2722	0.13	+2.1
154,762	+		GFF2722	0.13	-0.5
154,765	+		GFF2722	0.13	+0.6
154,765	+		GFF2722	0.13	+0.5
154,765	+		GFF2722	0.13	+1.1
154,765	+		GFF2722	0.13	-2.2
154,765	+		GFF2722	0.13	-1.5
154,765	+		GFF2722	0.13	+1.1
154,765	+		GFF2722	0.13	-0.2
154,765	+		GFF2722	0.13	-1.5
154,765	+		GFF2722	0.13	+1.6
154,765	+		GFF2722	0.13	+0.4
154,765	+		GFF2722	0.13	-0.7
154,766	-		GFF2722	0.13	-2.7
154,766	-		GFF2722	0.13	+1.7
154,766	-		GFF2722	0.13	+0.1
154,766	-		GFF2722	0.13	-1.2
154,766	-		GFF2722	0.13	-0.5
154,766	-		GFF2722	0.13	+2.1
154,766	-		GFF2722	0.13	+0.1
154,766	-		GFF2722	0.13	-0.3
154,766	-		GFF2722	0.13	-1.6
154,766	-		GFF2722	0.13	-1.5
154,969	+		GFF2722	0.35	+2.1
154,969	+		GFF2722	0.35	-0.4
154,969	+		GFF2722	0.35	-2.4
154,969	+		GFF2722	0.35	-2.9
154,969	+		GFF2722	0.35	+1.4
154,970	-		GFF2722	0.35	+1.1
154,970	-		GFF2722	0.35	-0.3
154,970	-		GFF2722	0.35	+2.1
155,005	+		GFF2722	0.38	+1.0
155,068	+		GFF2722	0.45	-0.1
155,068	+		GFF2722	0.45	-1.5
155,068	+		GFF2722	0.45	-1.4
155,069	-		GFF2722	0.45	+2.0
155,227	+		GFF2722	0.62	+0.7
155,573	+				+0.5
155,573	+				+2.3
155,573	+				-0.0
155,573	+				-0.3
155,573	+				-1.2
155,573	+				+0.5
155,574	-				+0.9
155,574	-				+0.5
155,574	-				+0.7
155,574	-				+0.1
155,574	-				+1.6
155,679	+				+1.6
155,679	+				+0.3
155,679	+				-1.4
155,679	+				-0.6
155,679	+				-2.7
155,680	-				+1.9
155,680	-				-1.1
155,680	-				+1.8
155,680	-				-0.2
155,680	-				+0.2
155,680	-				-0.6
155,680	-				+0.0
155,680	-				+0.1
155,680	-				+0.1
156,180	-		GFF2723	0.55	-0.5
156,180	-		GFF2723	0.55	+2.9
156,180	-		GFF2723	0.55	-0.1
156,180	-		GFF2723	0.55	+0.7
156,321	+		GFF2723	0.72	+0.7
156,321	+		GFF2723	0.72	-0.7
156,321	+		GFF2723	0.72	+0.5
156,322	-		GFF2723	0.72	+0.9
156,322	-		GFF2723	0.72	-0.9
156,322	-		GFF2723	0.72	-1.2
156,322	-		GFF2723	0.72	+1.1
156,322	-		GFF2723	0.72	+0.8
156,485	+				+0.0
156,485	+				-0.2
156,485	+				-0.7
156,485	+				-3.3
156,485	+				+2.3
156,486	-				-2.5
156,486	-				-1.4
156,486	-				-1.7
156,486	-				-1.3
156,686	+				+1.2
156,686	+				-2.6
156,686	+				-1.1
156,686	+				-0.9
156,687	-				+1.2
156,687	-				-2.3
156,687	-				-1.6
156,687	-				-1.2
156,713	+				-1.8
156,713	+				+3.4
156,714	-				-0.5
156,714	-				-1.3
156,770	+		GFF2724	0.15	+0.9
156,770	+		GFF2724	0.15	-3.0
156,771	-		GFF2724	0.15	-1.3
156,771	-		GFF2724	0.15	-1.9
156,771	-		GFF2724	0.15	-0.3
156,806	+		GFF2724	0.18	-0.5
156,807	-		GFF2724	0.19	-1.5
156,821	+		GFF2724	0.20	-1.6
156,821	+		GFF2724	0.20	+0.5
156,822	-		GFF2724	0.20	-1.9
156,822	-		GFF2724	0.20	+1.6
156,839	+		GFF2724	0.22	-0.5
156,840	-		GFF2724	0.22	-1.2
156,899	+		GFF2724	0.27	-2.4
156,900	-		GFF2724	0.27	+2.5
156,926	+		GFF2724	0.30	-1.8
156,926	+		GFF2724	0.30	+0.1
156,926	+		GFF2724	0.30	-0.5
156,926	+		GFF2724	0.30	+0.2
156,927	-		GFF2724	0.30	-0.7
156,927	-		GFF2724	0.30	-3.3
156,927	-		GFF2724	0.30	+0.2
156,927	-		GFF2724	0.30	-0.2
156,927	-		GFF2724	0.30	-0.5
156,927	-		GFF2724	0.30	-1.0
156,927	-		GFF2724	0.30	-0.7
156,929	-		GFF2724	0.30	-3.6
156,953	+		GFF2724	0.32	-4.1
156,953	+		GFF2724	0.32	-0.5
156,954	-		GFF2724	0.32	-0.4
156,983	+		GFF2724	0.35	-1.6
156,983	+		GFF2724	0.35	+0.3
156,983	+		GFF2724	0.35	+1.5
156,984	-		GFF2724	0.35	-0.2
156,984	-		GFF2724	0.35	+0.5
156,984	-		GFF2724	0.35	-0.2
156,984	-		GFF2724	0.35	-2.1
157,046	+		GFF2724	0.41	+0.0
157,087	-		GFF2724	0.45	-0.0
157,087	-		GFF2724	0.45	+0.6
157,193	+		GFF2724	0.55	-0.3
157,193	+		GFF2724	0.55	-0.5
157,193	+		GFF2724	0.55	-0.4
157,194	-		GFF2724	0.55	-1.5
157,194	-		GFF2724	0.55	-0.3
157,283	+		GFF2724	0.63	-0.9
157,283	+		GFF2724	0.63	-1.0
157,284	-		GFF2724	0.63	+0.6
157,358	+		GFF2724	0.70	-0.7
157,358	+		GFF2724	0.70	-1.6
157,358	+		GFF2724	0.70	-1.1
157,359	-		GFF2724	0.70	-0.5
157,361	+		GFF2724	0.70	-0.8
157,508	+		GFF2724	0.84	-1.4
157,508	+		GFF2724	0.84	+0.0
157,508	+		GFF2724	0.84	+0.5
157,508	+		GFF2724	0.84	-0.7
157,508	+		GFF2724	0.84	-0.4
157,508	+		GFF2724	0.84	+0.1
157,508	+		GFF2724	0.84	+3.0
157,509	-		GFF2724	0.84	+3.6
157,509	-		GFF2724	0.84	-1.0
157,509	-		GFF2724	0.84	+1.0
157,509	-		GFF2724	0.84	-2.2
157,509	-		GFF2724	0.84	+0.5