Strain Fitness in Variovorax sp. SCN45 around GFF2714

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
146,934	+				-1.8
146,935	-				+1.1
147,366	+				+2.1
147,366	+				+0.5
147,432	+				-1.8
147,432	+				+0.7
147,432	+				+0.7
147,433	-				+1.6
147,433	-				-1.1
147,433	-				+0.9
147,433	-				+1.2
147,433	-				-0.9
147,651	-				-2.5
147,651	-				-0.2
147,747	+				+0.1
147,747	+				-2.9
147,747	+				+0.5
147,747	+				-0.5
147,748	-				-0.9
148,115	+		GFF2714	0.45	-3.5
148,116	-		GFF2714	0.46	-2.8
148,116	-		GFF2714	0.46	+0.5
148,116	-		GFF2714	0.46	-3.1
148,389	-		GFF2714	0.72	-1.2
148,389	-		GFF2714	0.72	-3.1
148,524	-		GFF2714	0.85	-1.4
148,524	-		GFF2714	0.85	-2.2
148,818	+				-0.9
149,262	+		GFF2715	0.47	-0.2
149,262	+		GFF2715	0.47	-1.9
149,262	+		GFF2715	0.47	-0.9
149,263	-		GFF2715	0.47	-0.0
149,544	+		GFF2715	0.76	-0.7
149,544	+		GFF2715	0.76	-1.7
149,544	+		GFF2715	0.76	-0.0
149,545	-		GFF2715	0.76	+0.1