Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2669 and GFF2670 overlap by 4 nucleotides GFF2670 and GFF2671 overlap by 4 nucleotides GFF2671 and GFF2672 are separated by 11 nucleotides GFF2672 and GFF2673 overlap by 1 nucleotides
GFF2669 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 91,789 to 92,859
GFF2669
GFF2670 - Acyl carrier protein, at 92,856 to 93,137
GFF2670
GFF2671 - Domain of unknown function / Efflux ABC transporter, permease protein, at 93,134 to 94,291
GFF2671
GFF2672 - ABC transporter, ATP-binding protein, at 94,303 to 95,211
GFF2672
GFF2673 - FIG00655207: hypothetical protein, at 95,211 to 96,191
GFF2673
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.174 kb on - strand, within GFF2669 at 92.973 kb on + strand, within GFF2670 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.363 kb on - strand, within GFF2671 at 94.011 kb on + strand, within GFF2671 at 94.011 kb on + strand, within GFF2671 at 94.012 kb on - strand, within GFF2671 at 94.012 kb on - strand, within GFF2671 at 94.012 kb on - strand, within GFF2671 at 94.140 kb on + strand, within GFF2671 at 94.140 kb on + strand, within GFF2671 at 94.141 kb on - strand, within GFF2671 at 94.141 kb on - strand, within GFF2671 at 94.167 kb on + strand, within GFF2671 at 94.167 kb on + strand, within GFF2671 at 94.167 kb on + strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.634 kb on + strand, within GFF2672 at 94.634 kb on + strand, within GFF2672 at 94.634 kb on + strand, within GFF2672 at 94.635 kb on - strand, within GFF2672 at 94.635 kb on - strand, within GFF2672 at 94.646 kb on + strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.950 kb on - strand, within GFF2672 at 95.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 92,173 + GFF2669 0.36 -1.5 92,173 + GFF2669 0.36 +0.6 92,173 + GFF2669 0.36 +0.8 92,173 + GFF2669 0.36 +1.2 92,174 - GFF2669 0.36 +0.2 92,973 + GFF2670 0.41 -1.0 93,362 + GFF2671 0.20 -1.0 93,362 + GFF2671 0.20 -0.7 93,362 + GFF2671 0.20 +0.7 93,363 - GFF2671 0.20 -1.6 94,011 + GFF2671 0.76 -2.0 94,011 + GFF2671 0.76 -0.5 94,012 - GFF2671 0.76 +0.2 94,012 - GFF2671 0.76 -0.5 94,012 - GFF2671 0.76 -0.9 94,140 + GFF2671 0.87 +0.6 94,140 + GFF2671 0.87 -1.2 94,141 - GFF2671 0.87 +0.4 94,141 - GFF2671 0.87 +0.5 94,167 + GFF2671 0.89 -2.2 94,167 + GFF2671 0.89 +0.7 94,167 + GFF2671 0.89 -0.5 94,168 - GFF2671 0.89 -1.7 94,168 - GFF2671 0.89 -0.2 94,168 - GFF2671 0.89 +0.5 94,168 - GFF2671 0.89 -0.3 94,634 + GFF2672 0.36 +0.6 94,634 + GFF2672 0.36 -0.9 94,634 + GFF2672 0.36 +2.5 94,635 - GFF2672 0.37 -0.5 94,635 - GFF2672 0.37 -0.5 94,646 + GFF2672 0.38 +0.1 94,647 - GFF2672 0.38 -1.9 94,647 - GFF2672 0.38 -0.4 94,647 - GFF2672 0.38 -0.7 94,647 - GFF2672 0.38 +0.9 94,950 - GFF2672 0.71 -2.9 95,180 + +0.1
Or see this region's nucleotide sequence