Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2557 and GFF2558 are separated by 97 nucleotides GFF2558 and GFF2559 overlap by 4 nucleotides GFF2559 and GFF2560 overlap by 14 nucleotides GFF2560 and GFF2561 are separated by 35 nucleotides GFF2561 and GFF2562 are separated by 54 nucleotides
GFF2557 - transport-associated, at 618,336 to 618,854
GFF2557
GFF2558 - DNA protection during starvation protein, at 618,952 to 619,512
GFF2558
GFF2559 - hypothetical protein, at 619,509 to 620,021
GFF2559
GFF2560 - FIG00932643: hypothetical protein, at 620,008 to 620,391
GFF2560
GFF2561 - FIG00931134: hypothetical protein, at 620,427 to 620,801
GFF2561
GFF2562 - UPF0391 membrane protein RGE_28580, at 620,856 to 621,020
GFF2562
Position (kb) 619
620
621 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 618.708 kb on - strand, within GFF2557 at 618.942 kb on + strand at 618.942 kb on + strand at 619.070 kb on + strand, within GFF2558 at 619.071 kb on - strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.308 kb on - strand, within GFF2558 at 619.308 kb on - strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.590 kb on + strand, within GFF2559 at 619.590 kb on + strand, within GFF2559 at 619.591 kb on - strand, within GFF2559 at 619.591 kb on - strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.703 kb on - strand, within GFF2559 at 619.703 kb on - strand, within GFF2559 at 619.867 kb on + strand, within GFF2559 at 619.868 kb on - strand, within GFF2559 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.533 kb on + strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.534 kb on - strand, within GFF2561 at 620.719 kb on + strand, within GFF2561 at 620.719 kb on + strand, within GFF2561 at 620.720 kb on - strand, within GFF2561 at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.805 kb on + strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.806 kb on - strand at 620.848 kb on + strand at 620.848 kb on + strand at 620.848 kb on + strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.849 kb on - strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.852 kb on + strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.853 kb on - strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.857 kb on + strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.858 kb on - strand at 620.894 kb on + strand, within GFF2562 at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.010 kb on + strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand at 621.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 618,708 - GFF2557 0.72 +2.1 618,942 + +0.6 618,942 + -1.4 619,070 + GFF2558 0.21 -0.2 619,071 - GFF2558 0.21 -2.3 619,142 + GFF2558 0.34 +1.3 619,142 + GFF2558 0.34 +3.3 619,142 + GFF2558 0.34 +1.8 619,307 + GFF2558 0.63 -1.6 619,307 + GFF2558 0.63 -0.5 619,307 + GFF2558 0.63 -0.5 619,307 + GFF2558 0.63 -0.7 619,307 + GFF2558 0.63 -0.1 619,307 + GFF2558 0.63 -0.4 619,307 + GFF2558 0.63 -1.6 619,307 + GFF2558 0.63 -2.0 619,308 - GFF2558 0.63 -0.3 619,308 - GFF2558 0.63 -0.5 619,319 + GFF2558 0.65 -0.7 619,319 + GFF2558 0.65 -0.6 619,319 + GFF2558 0.65 -2.5 619,395 - GFF2558 0.79 +0.5 619,395 - GFF2558 0.79 -0.3 619,395 - GFF2558 0.79 -0.5 619,395 - GFF2558 0.79 -2.4 619,590 + GFF2559 0.16 -0.9 619,590 + GFF2559 0.16 +1.1 619,591 - GFF2559 0.16 +0.9 619,591 - GFF2559 0.16 +1.1 619,702 + GFF2559 0.38 -1.0 619,702 + GFF2559 0.38 -0.3 619,702 + GFF2559 0.38 +0.4 619,702 + GFF2559 0.38 +0.2 619,703 - GFF2559 0.38 +2.2 619,703 - GFF2559 0.38 +1.0 619,867 + GFF2559 0.70 -3.2 619,868 - GFF2559 0.70 -0.8 620,324 + GFF2560 0.82 +3.0 620,324 + GFF2560 0.82 +3.4 620,324 + GFF2560 0.82 +1.9 620,324 + GFF2560 0.82 +0.7 620,324 + GFF2560 0.82 -1.1 620,324 + GFF2560 0.82 -1.1 620,325 - GFF2560 0.83 -0.8 620,325 - GFF2560 0.83 -0.5 620,325 - GFF2560 0.83 +0.5 620,325 - GFF2560 0.83 +1.1 620,325 - GFF2560 0.83 +0.3 620,325 - GFF2560 0.83 -2.2 620,325 - GFF2560 0.83 -2.9 620,325 - GFF2560 0.83 -1.9 620,325 - GFF2560 0.83 +0.1 620,325 - GFF2560 0.83 +1.8 620,431 + +0.5 620,431 + -0.2 620,431 + -0.9 620,431 + -0.4 620,431 + -1.8 620,431 + -1.6 620,432 - -0.4 620,432 - -1.4 620,432 - -0.2 620,432 - -2.5 620,432 - +0.1 620,432 - -2.6 620,533 + GFF2561 0.28 -2.1 620,533 + GFF2561 0.28 +2.0 620,533 + GFF2561 0.28 -2.3 620,533 + GFF2561 0.28 -2.5 620,533 + GFF2561 0.28 +0.2 620,533 + GFF2561 0.28 -0.4 620,533 + GFF2561 0.28 -0.0 620,534 - GFF2561 0.29 -2.4 620,534 - GFF2561 0.29 +0.5 620,534 - GFF2561 0.29 -2.9 620,534 - GFF2561 0.29 -0.8 620,534 - GFF2561 0.29 +0.9 620,534 - GFF2561 0.29 +1.3 620,719 + GFF2561 0.78 +1.1 620,719 + GFF2561 0.78 +0.7 620,720 - GFF2561 0.78 -3.0 620,805 + -2.2 620,805 + -1.0 620,805 + -0.5 620,805 + -2.4 620,805 + -0.8 620,805 + -2.0 620,805 + -0.5 620,805 + +0.6 620,805 + -1.1 620,805 + -0.0 620,805 + +0.3 620,805 + -0.6 620,805 + -1.9 620,805 + -1.0 620,805 + -2.0 620,805 + +1.3 620,806 - +0.7 620,806 - -2.9 620,806 - +0.5 620,806 - -0.9 620,806 - +0.0 620,806 - -0.2 620,806 - -0.5 620,806 - -1.7 620,806 - +0.3 620,806 - -0.2 620,806 - -1.7 620,806 - -1.0 620,806 - -0.5 620,806 - -0.7 620,806 - -2.5 620,806 - -0.1 620,806 - -0.3 620,806 - +0.7 620,848 + -0.9 620,848 + -0.5 620,848 + +0.7 620,849 - -1.4 620,849 - +0.2 620,849 - +1.3 620,849 - -1.7 620,849 - -0.4 620,849 - +2.0 620,849 - -0.3 620,852 + +0.2 620,852 + -1.6 620,852 + -2.1 620,852 + +1.0 620,852 + -0.5 620,852 + +1.5 620,852 + +4.0 620,852 + -0.9 620,852 + -1.0 620,852 + -0.7 620,852 + -2.2 620,852 + -4.1 620,852 + -0.0 620,853 - -2.0 620,853 - -2.8 620,853 - +2.9 620,853 - +1.0 620,853 - -2.3 620,853 - -1.0 620,853 - -1.1 620,853 - -0.9 620,853 - -4.3 620,853 - +1.0 620,853 - +1.1 620,853 - -0.1 620,857 + +0.9 620,857 + +0.6 620,857 + -0.5 620,857 + -0.9 620,857 + -1.4 620,857 + +0.4 620,857 + +0.9 620,858 - -1.6 620,858 - +0.4 620,858 - -1.3 620,858 - +2.4 620,858 - +0.3 620,858 - -1.4 620,858 - -1.5 620,858 - -0.6 620,858 - -1.7 620,858 - +0.3 620,858 - -1.4 620,858 - +2.1 620,894 + GFF2562 0.23 +1.2 621,010 + +0.3 621,010 + -0.7 621,010 + -3.0 621,010 + +1.4 621,010 + +1.3 621,010 + +0.5 621,010 + -0.4 621,010 + -2.5 621,010 + -0.5 621,010 + -1.4 621,011 - +2.8 621,011 - +0.1 621,011 - -0.1 621,011 - -0.2 621,011 - +1.1 621,011 - -2.4
Or see this region's nucleotide sequence