Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2543 and GFF2544 are separated by 131 nucleotides GFF2544 and GFF2545 overlap by 4 nucleotides
GFF2543 - Uncharacterized membrane protein Bcep18194_A6058, at 606,046 to 607,077
GFF2543
GFF2544 - Ubiquinone biosynthesis protein UbiJ, at 607,209 to 607,778
GFF2544
GFF2545 - Ubiquinone biosynthesis regulatory protein kinase UbiB, at 607,775 to 609,340
GFF2545
Position (kb) 607
608 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.520 kb on + strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.521 kb on - strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.934 kb on + strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 606.935 kb on - strand, within GFF2543 at 607.075 kb on + strand at 607.075 kb on + strand at 607.075 kb on + strand at 607.075 kb on + strand at 607.075 kb on + strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.076 kb on - strand at 607.080 kb on + strand at 607.080 kb on + strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.081 kb on - strand at 607.188 kb on - strand at 607.199 kb on - strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.208 kb on + strand at 607.209 kb on - strand at 607.209 kb on - strand at 607.209 kb on - strand at 607.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 606,520 + GFF2543 0.46 -1.0 606,520 + GFF2543 0.46 +0.9 606,520 + GFF2543 0.46 -0.5 606,520 + GFF2543 0.46 +0.1 606,520 + GFF2543 0.46 -0.2 606,520 + GFF2543 0.46 -2.8 606,520 + GFF2543 0.46 -1.1 606,521 - GFF2543 0.46 -1.5 606,521 - GFF2543 0.46 +0.1 606,521 - GFF2543 0.46 -1.6 606,521 - GFF2543 0.46 -0.5 606,521 - GFF2543 0.46 -1.6 606,521 - GFF2543 0.46 +0.1 606,521 - GFF2543 0.46 -1.1 606,934 + GFF2543 0.86 -1.7 606,934 + GFF2543 0.86 -2.8 606,934 + GFF2543 0.86 -0.6 606,934 + GFF2543 0.86 -1.0 606,934 + GFF2543 0.86 -0.1 606,934 + GFF2543 0.86 -1.4 606,934 + GFF2543 0.86 -1.0 606,934 + GFF2543 0.86 -1.7 606,934 + GFF2543 0.86 -3.3 606,934 + GFF2543 0.86 -2.4 606,935 - GFF2543 0.86 -2.0 606,935 - GFF2543 0.86 -0.5 606,935 - GFF2543 0.86 -1.0 606,935 - GFF2543 0.86 -0.0 606,935 - GFF2543 0.86 -1.9 606,935 - GFF2543 0.86 -1.0 606,935 - GFF2543 0.86 -0.6 606,935 - GFF2543 0.86 -0.6 606,935 - GFF2543 0.86 -0.9 606,935 - GFF2543 0.86 -0.3 606,935 - GFF2543 0.86 -1.6 606,935 - GFF2543 0.86 -3.6 607,075 + +0.1 607,075 + +1.3 607,075 + +1.0 607,075 + +1.2 607,075 + +1.3 607,076 - -0.2 607,076 - -1.1 607,076 - +0.4 607,076 - -1.4 607,076 - +0.7 607,076 - -0.5 607,076 - +1.2 607,076 - +0.2 607,076 - -1.3 607,076 - +1.4 607,080 + +0.0 607,080 + -0.9 607,081 - +1.3 607,081 - -0.7 607,081 - -0.9 607,081 - +0.8 607,081 - -0.7 607,081 - +0.8 607,081 - +0.6 607,081 - -0.0 607,081 - +0.8 607,188 - -0.0 607,199 - -0.7 607,208 + +1.5 607,208 + -0.6 607,208 + -0.2 607,208 + -1.0 607,208 + -4.0 607,208 + +0.9 607,208 + -1.3 607,208 + -0.4 607,208 + +0.2 607,208 + +0.9 607,209 - +1.3 607,209 - +0.7 607,209 - +0.7 607,787 + -0.3
Or see this region's nucleotide sequence