Strain Fitness in Variovorax sp. SCN45 around GFF2491

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2490 and GFF2491 are separated by 177 nucleotidesGFF2491 and GFF2492 are separated by 16 nucleotides GFF2490 - Transcriptional regulator, LysR family, at 548,888 to 549,808 GFF2490 GFF2491 - Threonine-synthase-like protein 3, at 549,986 to 551,134 GFF2491 GFF2492 - BUG/TctC family periplasmic protein, at 551,151 to 552,131 GFF2492 Position (kb) 549 550 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.057 kb on + strand, within GFF2490at 549.058 kb on - strand, within GFF2490at 549.132 kb on + strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.508 kb on - strand, within GFF2490at 549.508 kb on - strand, within GFF2490at 549.508 kb on - strand, within GFF2490at 549.833 kb on + strandat 549.847 kb on + strandat 549.867 kb on + strandat 549.867 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 550.064 kb on + strandat 550.139 kb on + strand, within GFF2491at 550.139 kb on + strand, within GFF2491at 550.139 kb on + strand, within GFF2491at 550.139 kb on + strand, within GFF2491at 550.140 kb on - strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.179 kb on - strand, within GFF2491at 550.406 kb on + strand, within GFF2491at 550.406 kb on + strand, within GFF2491at 550.446 kb on - strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.503 kb on - strand, within GFF2491at 550.556 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.628 kb on + strand, within GFF2491at 550.628 kb on + strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.721 kb on + strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.841 kb on + strand, within GFF2491at 550.841 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.890 kb on - strand, within GFF2491at 550.890 kb on - strand, within GFF2491at 551.140 kb on + strandat 551.141 kb on - strandat 551.141 kb on - strandat 551.415 kb on + strand, within GFF2492at 551.415 kb on + strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.828 kb on + strand, within GFF2492at 551.828 kb on + strand, within GFF2492at 551.829 kb on - strand, within GFF2492at 551.829 kb on - strand, within GFF2492

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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549,012 + GFF2490 0.13 -0.7
549,012 + GFF2490 0.13 -1.3
549,012 + GFF2490 0.13 +1.3
549,012 + GFF2490 0.13 -0.0
549,012 + GFF2490 0.13 +0.2
549,013 - GFF2490 0.14 -1.5
549,013 - GFF2490 0.14 +0.2
549,013 - GFF2490 0.14 +2.3
549,013 - GFF2490 0.14 -1.0
549,057 + GFF2490 0.18 -0.4
549,058 - GFF2490 0.18 -0.3
549,132 + GFF2490 0.26 -0.1
549,133 - GFF2490 0.27 -1.4
549,133 - GFF2490 0.27 -0.5
549,133 - GFF2490 0.27 -0.1
549,133 - GFF2490 0.27 -0.9
549,133 - GFF2490 0.27 +1.4
549,508 - GFF2490 0.67 +1.3
549,508 - GFF2490 0.67 -0.3
549,508 - GFF2490 0.67 -1.0
549,833 + +0.9
549,847 + -1.0
549,867 + -2.8
549,867 + -2.4
549,885 + -0.6
549,885 + -0.7
549,885 + -2.3
549,885 + -0.6
549,885 + +0.7
549,885 + +0.1
549,886 - +0.6
549,886 - +0.2
549,886 - -1.8
549,886 - +0.2
549,886 - -0.1
549,886 - +0.3
549,886 - -0.7
549,886 - +1.6
549,886 - +0.2
549,886 - +0.3
550,064 + +2.0
550,139 + GFF2491 0.13 +1.3
550,139 + GFF2491 0.13 +0.3
550,139 + GFF2491 0.13 -1.8
550,139 + GFF2491 0.13 -1.2
550,140 - GFF2491 0.13 -1.8
550,178 + GFF2491 0.17 +2.6
550,178 + GFF2491 0.17 -1.3
550,178 + GFF2491 0.17 -1.5
550,178 + GFF2491 0.17 -2.1
550,179 - GFF2491 0.17 +1.3
550,406 + GFF2491 0.37 +0.5
550,406 + GFF2491 0.37 -0.5
550,446 - GFF2491 0.40 -1.8
550,466 + GFF2491 0.42 +1.8
550,466 + GFF2491 0.42 -1.6
550,466 + GFF2491 0.42 +0.6
550,466 + GFF2491 0.42 +0.6
550,467 - GFF2491 0.42 -0.2
550,467 - GFF2491 0.42 -0.8
550,467 - GFF2491 0.42 -1.0
550,467 - GFF2491 0.42 -0.7
550,467 - GFF2491 0.42 +0.0
550,467 - GFF2491 0.42 +0.1
550,503 - GFF2491 0.45 -0.5
550,556 + GFF2491 0.50 -2.1
550,583 + GFF2491 0.52 +0.8
550,583 + GFF2491 0.52 +0.9
550,583 + GFF2491 0.52 +0.3
550,584 - GFF2491 0.52 +1.8
550,584 - GFF2491 0.52 -1.6
550,584 - GFF2491 0.52 -1.9
550,620 + GFF2491 0.55 +1.6
550,620 + GFF2491 0.55 +0.2
550,620 + GFF2491 0.55 +2.6
550,620 + GFF2491 0.55 -0.5
550,620 + GFF2491 0.55 -0.7
550,620 + GFF2491 0.55 -3.4
550,621 - GFF2491 0.55 -0.4
550,621 - GFF2491 0.55 -0.1
550,621 - GFF2491 0.55 +0.1
550,621 - GFF2491 0.55 +1.3
550,621 - GFF2491 0.55 -1.3
550,621 - GFF2491 0.55 -0.0
550,628 + GFF2491 0.56 -1.6
550,628 + GFF2491 0.56 +1.0
550,629 - GFF2491 0.56 -0.4
550,629 - GFF2491 0.56 -0.7
550,629 - GFF2491 0.56 -1.9
550,629 - GFF2491 0.56 -1.5
550,629 - GFF2491 0.56 -1.3
550,629 - GFF2491 0.56 -1.4
550,721 + GFF2491 0.64 -0.4
550,722 - GFF2491 0.64 +0.7
550,722 - GFF2491 0.64 -0.3
550,722 - GFF2491 0.64 -0.9
550,722 - GFF2491 0.64 -0.0
550,722 - GFF2491 0.64 +0.7
550,841 + GFF2491 0.74 -0.5
550,841 + GFF2491 0.74 +0.2
550,889 + GFF2491 0.79 +0.0
550,889 + GFF2491 0.79 +0.2
550,889 + GFF2491 0.79 -0.3
550,889 + GFF2491 0.79 +0.4
550,889 + GFF2491 0.79 -0.9
550,889 + GFF2491 0.79 -1.1
550,889 + GFF2491 0.79 -0.1
550,890 - GFF2491 0.79 -0.4
550,890 - GFF2491 0.79 +2.3
551,140 + -1.4
551,141 - +0.7
551,141 - +0.5
551,415 + GFF2492 0.27 -1.1
551,415 + GFF2492 0.27 -1.3
551,416 - GFF2492 0.27 -0.3
551,416 - GFF2492 0.27 +2.3
551,416 - GFF2492 0.27 +0.2
551,416 - GFF2492 0.27 +1.4
551,416 - GFF2492 0.27 -0.0
551,416 - GFF2492 0.27 -1.6
551,828 + GFF2492 0.69 -0.6
551,828 + GFF2492 0.69 +0.7
551,829 - GFF2492 0.69 +0.3
551,829 - GFF2492 0.69 +1.4

Or see this region's nucleotide sequence