Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2466 and GFF2467 are separated by 2 nucleotides GFF2467 and GFF2468 are separated by 16 nucleotides GFF2468 and GFF2469 are separated by 75 nucleotides GFF2469 and GFF2470 are separated by 2 nucleotides GFF2470 and GFF2471 are separated by 25 nucleotides
GFF2466 - no description, at 525,922 to 526,788
GFF2466
GFF2467 - Response regulator BaeR, at 526,791 to 527,507
GFF2467
GFF2468 - Outer membrane protein assembly factor YaeT, at 527,524 to 529,926
GFF2468
GFF2469 - hypothetical protein, at 530,002 to 530,610
GFF2469
GFF2470 - no description, at 530,613 to 530,798
GFF2470
GFF2471 - Outer membrane porin protein 32 precursor, at 530,824 to 531,981
GFF2471
Position (kb) 527
528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 526.564 kb on + strand, within GFF2466 at 527.192 kb on - strand, within GFF2467 at 527.192 kb on - strand, within GFF2467 at 527.603 kb on + strand at 527.621 kb on + strand at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.766 kb on - strand, within GFF2468 at 528.005 kb on + strand, within GFF2468 at 528.005 kb on + strand, within GFF2468 at 528.006 kb on - strand, within GFF2468 at 528.026 kb on + strand, within GFF2468 at 528.027 kb on - strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.042 kb on - strand, within GFF2468 at 528.042 kb on - strand, within GFF2468 at 528.257 kb on + strand, within GFF2468 at 528.258 kb on - strand, within GFF2468 at 528.263 kb on + strand, within GFF2468 at 528.264 kb on - strand, within GFF2468 at 528.264 kb on - strand, within GFF2468 at 528.285 kb on - strand, within GFF2468 at 528.285 kb on - strand, within GFF2468 at 528.285 kb on - strand, within GFF2468 at 528.314 kb on + strand, within GFF2468 at 528.405 kb on - strand, within GFF2468 at 528.405 kb on - strand, within GFF2468 at 528.405 kb on - strand, within GFF2468 at 528.422 kb on + strand, within GFF2468 at 528.422 kb on + strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.485 kb on + strand, within GFF2468 at 528.485 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.522 kb on - strand, within GFF2468 at 528.551 kb on + strand, within GFF2468 at 528.873 kb on - strand, within GFF2468 at 529.028 kb on + strand, within GFF2468 at 529.028 kb on + strand, within GFF2468 at 529.226 kb on + strand, within GFF2468 at 529.226 kb on + strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.275 kb on - strand, within GFF2468 at 529.475 kb on + strand, within GFF2468 at 529.494 kb on - strand, within GFF2468 at 529.754 kb on + strand at 529.754 kb on + strand at 529.754 kb on + strand at 529.754 kb on + strand at 529.755 kb on - strand at 530.060 kb on - strand at 530.114 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 526,564 + GFF2466 0.74 -0.1 527,192 - GFF2467 0.56 -0.7 527,192 - GFF2467 0.56 +1.3 527,603 + +2.0 527,621 + -1.5 527,765 + GFF2468 0.10 +1.3 527,765 + GFF2468 0.10 -0.8 527,765 + GFF2468 0.10 -1.6 527,766 - GFF2468 0.10 -3.2 528,005 + GFF2468 0.20 -0.1 528,005 + GFF2468 0.20 +0.3 528,006 - GFF2468 0.20 -2.6 528,026 + GFF2468 0.21 -3.1 528,027 - GFF2468 0.21 +0.3 528,041 + GFF2468 0.22 +0.3 528,041 + GFF2468 0.22 +0.7 528,041 + GFF2468 0.22 -0.2 528,041 + GFF2468 0.22 +0.3 528,042 - GFF2468 0.22 -1.0 528,042 - GFF2468 0.22 -1.2 528,257 + GFF2468 0.31 +0.8 528,258 - GFF2468 0.31 -0.4 528,263 + GFF2468 0.31 +0.5 528,264 - GFF2468 0.31 -0.0 528,264 - GFF2468 0.31 -1.1 528,285 - GFF2468 0.32 +0.7 528,285 - GFF2468 0.32 +1.7 528,285 - GFF2468 0.32 -2.1 528,314 + GFF2468 0.33 -0.9 528,405 - GFF2468 0.37 +0.7 528,405 - GFF2468 0.37 -0.0 528,405 - GFF2468 0.37 -3.4 528,422 + GFF2468 0.37 -1.6 528,422 + GFF2468 0.37 -1.7 528,423 - GFF2468 0.37 +0.0 528,423 - GFF2468 0.37 -0.7 528,423 - GFF2468 0.37 -0.0 528,423 - GFF2468 0.37 -0.5 528,485 + GFF2468 0.40 +2.8 528,485 + GFF2468 0.40 +0.2 528,521 + GFF2468 0.41 +0.9 528,521 + GFF2468 0.41 +0.3 528,521 + GFF2468 0.41 +3.3 528,521 + GFF2468 0.41 -0.3 528,522 - GFF2468 0.42 -0.1 528,551 + GFF2468 0.43 -0.9 528,873 - GFF2468 0.56 -0.0 529,028 + GFF2468 0.63 -1.1 529,028 + GFF2468 0.63 +0.6 529,226 + GFF2468 0.71 -0.0 529,226 + GFF2468 0.71 -2.1 529,227 - GFF2468 0.71 -0.7 529,227 - GFF2468 0.71 -0.2 529,227 - GFF2468 0.71 -1.6 529,275 - GFF2468 0.73 -1.0 529,475 + GFF2468 0.81 +0.2 529,494 - GFF2468 0.82 -0.7 529,754 + +1.7 529,754 + +0.9 529,754 + -1.0 529,754 + -0.1 529,755 - +1.3 530,060 - -1.6 530,114 + GFF2469 0.18 -0.7 530,159 + GFF2469 0.26 -1.4 530,159 + GFF2469 0.26 +0.7 530,159 + GFF2469 0.26 -2.8 530,159 + GFF2469 0.26 +1.0 530,160 - GFF2469 0.26 +0.3 530,160 - GFF2469 0.26 -0.5 530,160 - GFF2469 0.26 -1.1 530,241 - GFF2469 0.39 -2.0 530,241 - GFF2469 0.39 -0.0 530,430 - GFF2469 0.70 -1.7 530,430 - GFF2469 0.70 +0.4
Or see this region's nucleotide sequence