Strain Fitness in Variovorax sp. SCN45 around GFF2444

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2442 and GFF2443 are separated by 236 nucleotidesGFF2443 and GFF2444 are separated by 26 nucleotidesGFF2444 and GFF2445 are separated by 188 nucleotidesGFF2445 and GFF2446 are separated by 115 nucleotides GFF2442 - RND efflux system, membrane fusion protein, at 495,689 to 496,840 GFF2442 GFF2443 - Iron-sulfur cluster regulator IscR, at 497,077 to 497,619 GFF2443 GFF2444 - Integral membrane protein, interacts with FtsH, at 497,646 to 498,341 GFF2444 GFF2445 - no description, at 498,530 to 498,898 GFF2445 GFF2446 - FIG00956403: hypothetical protein, at 499,014 to 501,233 GFF2446 Position (kb) 497 498 499Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 496.897 kb on + strandat 496.898 kb on - strandat 496.898 kb on - strandat 496.898 kb on - strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.397 kb on - strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.401 kb on - strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.634 kb on + strandat 497.635 kb on - strandat 497.647 kb on + strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.320 kb on - strandat 498.885 kb on + strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.914 kb on - strandat 498.914 kb on - strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.931 kb on - strandat 498.931 kb on - strandat 498.931 kb on - strandat 498.942 kb on + strandat 498.942 kb on + strandat 499.115 kb on + strandat 499.116 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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496,897 + -0.1
496,898 - -0.9
496,898 - -2.0
496,898 - -0.5
497,078 + +2.7
497,078 + +0.3
497,078 + +1.2
497,078 + -0.0
497,078 + -1.1
497,078 + -0.8
497,078 + -0.3
497,079 - -2.1
497,079 - -3.3
497,079 - +0.1
497,079 - -1.6
497,079 - -1.0
497,079 - -2.0
497,397 - GFF2443 0.59 -0.5
497,400 + GFF2443 0.59 -1.9
497,400 + GFF2443 0.59 +0.6
497,400 + GFF2443 0.59 -0.4
497,401 - GFF2443 0.60 +2.4
497,498 + GFF2443 0.78 -3.5
497,498 + GFF2443 0.78 +0.6
497,498 + GFF2443 0.78 -1.3
497,498 + GFF2443 0.78 -0.2
497,498 + GFF2443 0.78 -0.5
497,499 - GFF2443 0.78 +0.1
497,499 - GFF2443 0.78 -1.8
497,499 - GFF2443 0.78 +1.7
497,634 + -0.2
497,635 - +0.8
497,647 + +0.8
497,648 - -0.0
497,648 - -1.4
497,648 - -1.0
497,704 + +0.7
497,704 + +2.3
497,704 + +1.3
497,704 + -3.7
497,704 + -0.5
497,704 + -1.8
497,704 + +0.8
497,704 + +0.8
497,704 + +1.0
497,704 + +0.2
497,705 - +0.5
497,705 - +0.3
497,705 - +0.7
497,705 - -1.8
497,705 - -1.7
497,705 - -0.9
497,705 - -2.5
497,705 - +2.2
497,705 - -0.3
497,705 - -2.3
497,705 - -1.2
497,716 + GFF2444 0.10 +0.1
497,716 + GFF2444 0.10 -2.6
497,716 + GFF2444 0.10 -2.2
497,716 + GFF2444 0.10 -1.9
497,716 + GFF2444 0.10 +0.7
497,716 + GFF2444 0.10 +0.3
497,717 - GFF2444 0.10 -1.5
497,717 - GFF2444 0.10 +0.5
497,717 - GFF2444 0.10 -0.7
497,717 - GFF2444 0.10 -0.5
497,717 - GFF2444 0.10 -3.2
497,717 - GFF2444 0.10 -0.8
497,717 - GFF2444 0.10 +0.3
497,717 - GFF2444 0.10 -2.9
497,717 - GFF2444 0.10 -2.4
497,740 + GFF2444 0.14 -0.7
497,740 + GFF2444 0.14 +0.3
497,740 + GFF2444 0.14 -1.0
497,740 + GFF2444 0.14 -0.7
497,740 + GFF2444 0.14 +0.3
497,740 + GFF2444 0.14 +1.3
497,740 + GFF2444 0.14 -1.1
497,740 + GFF2444 0.14 -2.6
497,740 + GFF2444 0.14 +0.7
497,740 + GFF2444 0.14 +1.3
497,740 + GFF2444 0.14 -2.1
497,740 + GFF2444 0.14 -0.9
497,740 + GFF2444 0.14 +0.3
497,740 + GFF2444 0.14 +0.3
497,740 + GFF2444 0.14 -1.4
497,740 + GFF2444 0.14 -0.0
497,740 + GFF2444 0.14 -0.5
497,740 + GFF2444 0.14 -0.1
497,740 + GFF2444 0.14 -1.4
497,740 + GFF2444 0.14 +2.3
497,740 + GFF2444 0.14 -0.5
497,740 + GFF2444 0.14 -0.9
497,740 + GFF2444 0.14 -0.1
497,740 + GFF2444 0.14 +2.3
497,741 - GFF2444 0.14 -0.9
497,741 - GFF2444 0.14 -2.0
497,741 - GFF2444 0.14 -0.6
497,741 - GFF2444 0.14 -1.3
497,741 - GFF2444 0.14 -0.1
497,741 - GFF2444 0.14 +0.7
497,741 - GFF2444 0.14 +2.3
497,741 - GFF2444 0.14 +3.2
497,741 - GFF2444 0.14 -2.4
497,741 - GFF2444 0.14 +1.3
497,741 - GFF2444 0.14 +1.3
497,741 - GFF2444 0.14 +0.3
497,741 - GFF2444 0.14 -2.1
497,741 - GFF2444 0.14 -0.3
497,741 - GFF2444 0.14 -1.4
497,741 - GFF2444 0.14 -0.1
497,741 - GFF2444 0.14 -2.0
497,741 - GFF2444 0.14 +1.3
497,741 - GFF2444 0.14 +1.3
497,741 - GFF2444 0.14 -0.0
497,741 - GFF2444 0.14 -1.1
497,741 - GFF2444 0.14 -2.9
498,124 + GFF2444 0.69 +0.3
498,124 + GFF2444 0.69 +0.1
498,124 + GFF2444 0.69 -0.3
498,124 + GFF2444 0.69 +0.7
498,124 + GFF2444 0.69 -1.4
498,124 + GFF2444 0.69 +1.9
498,124 + GFF2444 0.69 -0.2
498,124 + GFF2444 0.69 -0.3
498,125 - GFF2444 0.69 -1.1
498,125 - GFF2444 0.69 -1.1
498,125 - GFF2444 0.69 +0.7
498,125 - GFF2444 0.69 -1.3
498,125 - GFF2444 0.69 +0.2
498,125 - GFF2444 0.69 -2.3
498,125 - GFF2444 0.69 -1.4
498,125 - GFF2444 0.69 -0.3
498,125 - GFF2444 0.69 +2.3
498,125 - GFF2444 0.69 +3.6
498,125 - GFF2444 0.69 -0.7
498,125 - GFF2444 0.69 +0.3
498,256 + GFF2444 0.88 -0.7
498,256 + GFF2444 0.88 -1.1
498,256 + GFF2444 0.88 -3.9
498,256 + GFF2444 0.88 +0.3
498,256 + GFF2444 0.88 -1.5
498,256 + GFF2444 0.88 +0.6
498,256 + GFF2444 0.88 +1.0
498,256 + GFF2444 0.88 -2.1
498,256 + GFF2444 0.88 -2.5
498,256 + GFF2444 0.88 +1.5
498,256 + GFF2444 0.88 -0.3
498,256 + GFF2444 0.88 -2.5
498,257 - GFF2444 0.88 +1.5
498,257 - GFF2444 0.88 -0.0
498,257 - GFF2444 0.88 +1.3
498,257 - GFF2444 0.88 +0.3
498,257 - GFF2444 0.88 -0.7
498,257 - GFF2444 0.88 -1.6
498,257 - GFF2444 0.88 -1.7
498,257 - GFF2444 0.88 -1.4
498,257 - GFF2444 0.88 -0.5
498,257 - GFF2444 0.88 -1.6
498,257 - GFF2444 0.88 -0.1
498,257 - GFF2444 0.88 -0.9
498,320 - -2.1
498,885 + -0.7
498,886 - -2.3
498,886 - -0.0
498,886 - -2.9
498,886 - -2.1
498,886 - -1.0
498,914 - -1.0
498,914 - +2.1
498,930 + -2.8
498,930 + -1.6
498,930 + -0.5
498,930 + +0.6
498,931 - +0.6
498,931 - -1.7
498,931 - +0.3
498,942 + -0.3
498,942 + -2.1
499,115 + +1.0
499,116 - -0.6

Or see this region's nucleotide sequence