Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2357 and GFF2358 are separated by 1 nucleotides GFF2358 and GFF2359 are separated by 31 nucleotides GFF2359 and GFF2360 are separated by 141 nucleotides
GFF2357 - DNA repair protein RecN, at 408,344 to 410,026
GFF2357
GFF2358 - NAD kinase (EC 2.7.1.23), at 410,028 to 410,939
GFF2358
GFF2359 - Heat-inducible transcription repressor HrcA, at 410,971 to 411,978
GFF2359
GFF2360 - GGDEF domain protein, at 412,120 to 413,979
GFF2360
Position (kb) 410
411
412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 410.939 kb on + strand at 410.939 kb on + strand at 410.939 kb on + strand at 410.939 kb on + strand at 410.940 kb on - strand at 410.940 kb on - strand at 410.940 kb on - strand at 410.940 kb on - strand at 410.940 kb on - strand at 410.940 kb on - strand at 410.940 kb on - strand at 410.940 kb on - strand at 410.951 kb on + strand at 410.952 kb on - strand at 410.952 kb on - strand at 410.952 kb on - strand at 410.959 kb on + strand at 410.959 kb on + strand at 410.959 kb on + strand at 410.960 kb on - strand at 410.960 kb on - strand at 411.019 kb on + strand at 411.019 kb on + strand at 411.019 kb on + strand at 411.019 kb on + strand at 411.020 kb on - strand at 411.020 kb on - strand at 411.020 kb on - strand at 411.162 kb on + strand, within GFF2359 at 411.162 kb on + strand, within GFF2359 at 411.162 kb on + strand, within GFF2359 at 411.163 kb on - strand, within GFF2359 at 411.163 kb on - strand, within GFF2359 at 411.163 kb on - strand, within GFF2359 at 411.163 kb on - strand, within GFF2359 at 411.452 kb on - strand, within GFF2359 at 411.452 kb on - strand, within GFF2359 at 411.484 kb on + strand, within GFF2359 at 411.484 kb on + strand, within GFF2359 at 411.484 kb on + strand, within GFF2359 at 411.484 kb on + strand, within GFF2359 at 411.484 kb on + strand, within GFF2359 at 411.485 kb on - strand, within GFF2359 at 411.485 kb on - strand, within GFF2359 at 411.485 kb on - strand, within GFF2359 at 411.485 kb on - strand, within GFF2359 at 411.485 kb on - strand, within GFF2359 at 411.485 kb on - strand, within GFF2359 at 411.499 kb on + strand, within GFF2359 at 411.500 kb on - strand, within GFF2359 at 411.500 kb on - strand, within GFF2359 at 411.500 kb on - strand, within GFF2359 at 411.500 kb on - strand, within GFF2359 at 411.847 kb on + strand, within GFF2359 at 411.847 kb on + strand, within GFF2359 at 411.847 kb on + strand, within GFF2359 at 411.847 kb on + strand, within GFF2359 at 411.847 kb on + strand, within GFF2359 at 411.848 kb on - strand, within GFF2359 at 411.848 kb on - strand, within GFF2359 at 411.848 kb on - strand, within GFF2359 at 411.848 kb on - strand, within GFF2359 at 411.908 kb on - strand at 411.977 kb on - strand at 411.977 kb on - strand at 411.995 kb on + strand at 411.995 kb on + strand at 411.995 kb on + strand at 411.995 kb on + strand at 412.101 kb on - strand at 412.101 kb on - strand at 412.238 kb on + strand at 412.238 kb on + strand at 412.238 kb on + strand at 412.238 kb on + strand at 412.238 kb on + strand at 412.238 kb on + strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.239 kb on - strand at 412.886 kb on + strand, within GFF2360 at 412.886 kb on + strand, within GFF2360 at 412.887 kb on - strand, within GFF2360 at 412.904 kb on + strand, within GFF2360 at 412.905 kb on - strand, within GFF2360 at 412.905 kb on - strand, within GFF2360 at 412.905 kb on - strand, within GFF2360
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 410,939 + +0.3 410,939 + -0.9 410,939 + +2.9 410,939 + +0.6 410,940 - -1.7 410,940 - -2.8 410,940 - +1.5 410,940 - +0.5 410,940 - +2.3 410,940 - +0.1 410,940 - -1.6 410,940 - -0.3 410,951 + -4.5 410,952 - -0.2 410,952 - -0.9 410,952 - +0.1 410,959 + +0.7 410,959 + -2.3 410,959 + -0.0 410,960 - -1.7 410,960 - -1.1 411,019 + -3.5 411,019 + -2.6 411,019 + -0.5 411,019 + -1.6 411,020 - -1.5 411,020 - -1.0 411,020 - -0.7 411,162 + GFF2359 0.19 +0.5 411,162 + GFF2359 0.19 -1.6 411,162 + GFF2359 0.19 +0.5 411,163 - GFF2359 0.19 -1.7 411,163 - GFF2359 0.19 -2.3 411,163 - GFF2359 0.19 -2.1 411,163 - GFF2359 0.19 +1.0 411,452 - GFF2359 0.48 -0.2 411,452 - GFF2359 0.48 -1.0 411,484 + GFF2359 0.51 -0.3 411,484 + GFF2359 0.51 -2.2 411,484 + GFF2359 0.51 -2.1 411,484 + GFF2359 0.51 -0.0 411,484 + GFF2359 0.51 -2.9 411,485 - GFF2359 0.51 -1.3 411,485 - GFF2359 0.51 -0.7 411,485 - GFF2359 0.51 -2.3 411,485 - GFF2359 0.51 -3.0 411,485 - GFF2359 0.51 -3.9 411,485 - GFF2359 0.51 -0.3 411,499 + GFF2359 0.52 +1.3 411,500 - GFF2359 0.52 +1.3 411,500 - GFF2359 0.52 +0.5 411,500 - GFF2359 0.52 -3.7 411,500 - GFF2359 0.52 -1.0 411,847 + GFF2359 0.87 -2.6 411,847 + GFF2359 0.87 -1.7 411,847 + GFF2359 0.87 -1.9 411,847 + GFF2359 0.87 -1.6 411,847 + GFF2359 0.87 -2.0 411,848 - GFF2359 0.87 -0.9 411,848 - GFF2359 0.87 -1.4 411,848 - GFF2359 0.87 -1.7 411,848 - GFF2359 0.87 -0.9 411,908 - -0.9 411,977 - +0.1 411,977 - +1.4 411,995 + -2.4 411,995 + +0.3 411,995 + -2.4 411,995 + -1.0 412,101 - -0.5 412,101 - -0.1 412,238 + -1.6 412,238 + -2.0 412,238 + +1.0 412,238 + +1.4 412,238 + -0.9 412,238 + +2.3 412,239 - +0.4 412,239 - -1.9 412,239 - +2.0 412,239 - -1.0 412,239 - +0.1 412,239 - -2.1 412,239 - -1.5 412,239 - -1.7 412,239 - -1.8 412,239 - -0.5 412,239 - -0.8 412,239 - -1.5 412,886 + GFF2360 0.41 -1.4 412,886 + GFF2360 0.41 -0.3 412,887 - GFF2360 0.41 -1.1 412,904 + GFF2360 0.42 -1.9 412,905 - GFF2360 0.42 -0.7 412,905 - GFF2360 0.42 +0.3 412,905 - GFF2360 0.42 +1.3
Or see this region's nucleotide sequence