Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2276 and GFF2277 are separated by 50 nucleotides GFF2277 and GFF2278 are separated by 1 nucleotides
GFF2276 - Chlorogenate esterase, at 329,371 to 331,110
GFF2276
GFF2277 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,161 to 331,895
GFF2277
GFF2278 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,897 to 333,711
GFF2278
Position (kb) 331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.342 kb on - strand, within GFF2276 at 330.342 kb on - strand, within GFF2276 at 330.356 kb on + strand, within GFF2276 at 330.357 kb on - strand, within GFF2276 at 330.420 kb on - strand, within GFF2276 at 330.485 kb on + strand, within GFF2276 at 330.486 kb on - strand, within GFF2276 at 330.510 kb on - strand, within GFF2276 at 330.563 kb on + strand, within GFF2276 at 330.564 kb on - strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.744 kb on - strand, within GFF2276 at 330.744 kb on - strand, within GFF2276 at 330.744 kb on - strand, within GFF2276 at 330.798 kb on - strand, within GFF2276 at 330.924 kb on - strand, within GFF2276 at 330.924 kb on - strand, within GFF2276 at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.267 kb on + strand, within GFF2277 at 331.267 kb on + strand, within GFF2277 at 331.267 kb on + strand, within GFF2277 at 331.268 kb on - strand, within GFF2277 at 331.268 kb on - strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.529 kb on - strand, within GFF2277 at 331.529 kb on - strand, within GFF2277 at 332.765 kb on + strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.810 kb on + strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 332.811 kb on - strand, within GFF2278
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 330,342 - GFF2276 0.56 +0.3 330,342 - GFF2276 0.56 -2.1 330,356 + GFF2276 0.57 +2.3 330,357 - GFF2276 0.57 -2.3 330,420 - GFF2276 0.60 -2.4 330,485 + GFF2276 0.64 -0.0 330,486 - GFF2276 0.64 -1.2 330,510 - GFF2276 0.65 -0.5 330,563 + GFF2276 0.69 -1.4 330,564 - GFF2276 0.69 -1.8 330,743 + GFF2276 0.79 -0.6 330,743 + GFF2276 0.79 -1.0 330,743 + GFF2276 0.79 -0.5 330,743 + GFF2276 0.79 +0.0 330,743 + GFF2276 0.79 +1.2 330,743 + GFF2276 0.79 -0.2 330,744 - GFF2276 0.79 -0.5 330,744 - GFF2276 0.79 +0.0 330,744 - GFF2276 0.79 +0.3 330,798 - GFF2276 0.82 +1.8 330,924 - GFF2276 0.89 +1.0 330,924 - GFF2276 0.89 -0.9 331,189 + +0.0 331,189 + -1.9 331,189 + -0.0 331,189 + -1.6 331,190 - +1.0 331,190 - -0.7 331,190 - +1.4 331,190 - -0.5 331,190 - -0.2 331,190 - -2.5 331,267 + GFF2277 0.14 +0.4 331,267 + GFF2277 0.14 +1.1 331,267 + GFF2277 0.14 -2.7 331,268 - GFF2277 0.15 -1.6 331,268 - GFF2277 0.15 +0.9 331,528 + GFF2277 0.50 +0.2 331,528 + GFF2277 0.50 -2.6 331,528 + GFF2277 0.50 -0.4 331,528 + GFF2277 0.50 -0.1 331,529 - GFF2277 0.50 +0.8 331,529 - GFF2277 0.50 +1.8 332,765 + GFF2278 0.48 +0.3 332,766 - GFF2278 0.48 -0.3 332,766 - GFF2278 0.48 +1.5 332,810 + GFF2278 0.50 +0.9 332,811 - GFF2278 0.50 +0.8 332,811 - GFF2278 0.50 +0.3
Or see this region's nucleotide sequence