Strain Fitness in Variovorax sp. SCN45 around GFF227

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF226 and GFF227 overlap by 1 nucleotidesGFF227 and GFF228 are separated by 147 nucleotides GFF226 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 252,852 to 254,492 GFF226 GFF227 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 254,492 to 255,532 GFF227 GFF228 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 255,680 to 256,720 GFF228 Position (kb) 254 255 256Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.613 kb on - strand, within GFF226at 253.613 kb on - strand, within GFF226at 253.718 kb on - strand, within GFF226at 253.718 kb on - strand, within GFF226at 253.718 kb on - strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 254.146 kb on + strand, within GFF226at 254.146 kb on + strand, within GFF226at 254.147 kb on - strand, within GFF226at 254.273 kb on - strand, within GFF226at 254.273 kb on - strand, within GFF226at 254.273 kb on - strand, within GFF226at 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.611 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.859 kb on + strand, within GFF227at 254.859 kb on + strand, within GFF227at 254.860 kb on - strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.976 kb on - strand, within GFF227at 254.976 kb on - strand, within GFF227at 254.976 kb on - strand, within GFF227at 254.976 kb on - strand, within GFF227at 255.021 kb on + strand, within GFF227at 255.021 kb on + strand, within GFF227at 255.022 kb on - strand, within GFF227at 255.108 kb on + strand, within GFF227at 255.108 kb on + strand, within GFF227at 255.109 kb on - strand, within GFF227at 255.109 kb on - strand, within GFF227at 255.109 kb on - strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.223 kb on - strand, within GFF227at 255.237 kb on + strand, within GFF227at 255.238 kb on - strand, within GFF227at 255.238 kb on - strand, within GFF227at 255.238 kb on - strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.280 kb on - strand, within GFF227at 255.280 kb on - strand, within GFF227at 255.280 kb on - strand, within GFF227at 255.291 kb on + strand, within GFF227at 255.336 kb on + strand, within GFF227at 255.336 kb on + strand, within GFF227at 255.336 kb on + strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.362 kb on - strand, within GFF227at 255.362 kb on - strand, within GFF227at 255.362 kb on - strand, within GFF227at 255.372 kb on + strand, within GFF227at 255.373 kb on - strand, within GFF227at 255.373 kb on - strand, within GFF227at 255.511 kb on + strandat 255.511 kb on + strandat 255.511 kb on + strandat 255.511 kb on + strandat 255.511 kb on + strandat 255.511 kb on + strandat 255.511 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.710 kb on + strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.711 kb on - strandat 255.714 kb on + strandat 255.714 kb on + strandat 255.714 kb on + strandat 255.715 kb on - strandat 255.715 kb on - strandat 255.715 kb on - strandat 255.715 kb on - strandat 255.715 kb on - strandat 255.715 kb on - strandat 255.765 kb on + strandat 255.765 kb on + strandat 255.765 kb on + strandat 255.765 kb on + strandat 255.766 kb on - strandat 255.766 kb on - strandat 255.766 kb on - strandat 255.766 kb on - strandat 255.766 kb on - strandat 255.790 kb on - strand, within GFF228at 255.814 kb on - strand, within GFF228at 255.857 kb on - strand, within GFF228at 255.993 kb on + strand, within GFF228at 255.993 kb on + strand, within GFF228at 255.993 kb on + strand, within GFF228at 255.993 kb on + strand, within GFF228at 255.993 kb on + strand, within GFF228at 255.993 kb on + strand, within GFF228at 255.994 kb on - strand, within GFF228at 255.994 kb on - strand, within GFF228at 255.994 kb on - strand, within GFF228at 255.994 kb on - strand, within GFF228at 255.994 kb on - strand, within GFF228at 255.994 kb on - strand, within GFF228at 255.994 kb on - strand, within GFF228at 256.098 kb on + strand, within GFF228at 256.099 kb on - strand, within GFF228at 256.099 kb on - strand, within GFF228at 256.123 kb on + strand, within GFF228at 256.230 kb on + strand, within GFF228at 256.231 kb on - strand, within GFF228at 256.321 kb on - strand, within GFF228at 256.321 kb on - strand, within GFF228at 256.321 kb on - strand, within GFF228at 256.321 kb on - strand, within GFF228at 256.333 kb on - strand, within GFF228at 256.486 kb on - strand, within GFF228at 256.486 kb on - strand, within GFF228at 256.486 kb on - strand, within GFF228

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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253,612 + GFF226 0.46 -3.1
253,612 + GFF226 0.46 -1.1
253,612 + GFF226 0.46 -1.6
253,612 + GFF226 0.46 -1.8
253,612 + GFF226 0.46 -2.8
253,612 + GFF226 0.46 -2.1
253,613 - GFF226 0.46 -1.3
253,613 - GFF226 0.46 -1.2
253,718 - GFF226 0.53 -2.1
253,718 - GFF226 0.53 -1.8
253,718 - GFF226 0.53 -1.6
253,855 + GFF226 0.61 -0.6
253,855 + GFF226 0.61 -3.2
253,855 + GFF226 0.61 +1.2
253,855 + GFF226 0.61 -0.3
253,856 - GFF226 0.61 -1.7
253,856 - GFF226 0.61 -0.9
253,856 - GFF226 0.61 -1.6
253,856 - GFF226 0.61 -3.4
253,856 - GFF226 0.61 +0.8
253,856 - GFF226 0.61 -0.8
253,856 - GFF226 0.61 -0.2
253,856 - GFF226 0.61 -2.1
254,146 + GFF226 0.79 +0.2
254,146 + GFF226 0.79 +0.8
254,147 - GFF226 0.79 -1.7
254,273 - GFF226 0.87 -1.2
254,273 - GFF226 0.87 -1.4
254,273 - GFF226 0.87 +0.9
254,474 + -1.0
254,474 + -1.0
254,474 + +1.6
254,474 + +0.4
254,474 + -2.2
254,474 + +2.7
254,474 + +2.3
254,474 + +0.2
254,475 - +0.4
254,475 - +0.3
254,475 - -1.8
254,475 - -1.6
254,475 - -1.0
254,475 - -1.7
254,475 - +1.8
254,611 + GFF227 0.11 -3.6
254,820 + GFF227 0.32 -0.8
254,820 + GFF227 0.32 -3.5
254,820 + GFF227 0.32 -0.6
254,820 + GFF227 0.32 +0.2
254,820 + GFF227 0.32 -2.8
254,820 + GFF227 0.32 -0.9
254,820 + GFF227 0.32 -0.4
254,820 + GFF227 0.32 -3.0
254,820 + GFF227 0.32 -1.4
254,821 - GFF227 0.32 -2.6
254,821 - GFF227 0.32 -2.5
254,821 - GFF227 0.32 -1.6
254,821 - GFF227 0.32 -0.7
254,821 - GFF227 0.32 -2.0
254,821 - GFF227 0.32 -0.1
254,859 + GFF227 0.35 +0.2
254,859 + GFF227 0.35 -2.6
254,860 - GFF227 0.35 +0.1
254,952 + GFF227 0.44 -0.2
254,952 + GFF227 0.44 -2.6
254,952 + GFF227 0.44 +1.8
254,952 + GFF227 0.44 +1.5
254,952 + GFF227 0.44 +0.2
254,952 + GFF227 0.44 +1.4
254,953 - GFF227 0.44 -1.3
254,953 - GFF227 0.44 -2.4
254,953 - GFF227 0.44 -2.6
254,953 - GFF227 0.44 +0.2
254,953 - GFF227 0.44 -3.6
254,953 - GFF227 0.44 -1.5
254,953 - GFF227 0.44 -0.8
254,975 + GFF227 0.46 -1.2
254,975 + GFF227 0.46 -1.0
254,975 + GFF227 0.46 -0.7
254,975 + GFF227 0.46 +0.1
254,975 + GFF227 0.46 -1.2
254,975 + GFF227 0.46 +2.2
254,975 + GFF227 0.46 -2.9
254,975 + GFF227 0.46 -0.9
254,976 - GFF227 0.46 -1.8
254,976 - GFF227 0.46 -0.5
254,976 - GFF227 0.46 +0.8
254,976 - GFF227 0.46 -0.8
255,021 + GFF227 0.51 -1.2
255,021 + GFF227 0.51 -1.4
255,022 - GFF227 0.51 -0.4
255,108 + GFF227 0.59 -1.0
255,108 + GFF227 0.59 -0.6
255,109 - GFF227 0.59 -1.0
255,109 - GFF227 0.59 +1.8
255,109 - GFF227 0.59 +1.4
255,201 + GFF227 0.68 -1.4
255,201 + GFF227 0.68 -1.2
255,201 + GFF227 0.68 -4.0
255,201 + GFF227 0.68 -2.2
255,201 + GFF227 0.68 +1.6
255,201 + GFF227 0.68 -1.3
255,201 + GFF227 0.68 -1.4
255,201 + GFF227 0.68 -2.1
255,202 - GFF227 0.68 -2.1
255,202 - GFF227 0.68 -0.6
255,202 - GFF227 0.68 +0.2
255,202 - GFF227 0.68 -1.6
255,223 - GFF227 0.70 -1.7
255,237 + GFF227 0.72 -2.6
255,238 - GFF227 0.72 +0.2
255,238 - GFF227 0.72 +1.8
255,238 - GFF227 0.72 -0.3
255,279 + GFF227 0.76 -2.6
255,279 + GFF227 0.76 -1.4
255,279 + GFF227 0.76 -1.7
255,279 + GFF227 0.76 -1.1
255,280 - GFF227 0.76 +0.4
255,280 - GFF227 0.76 -0.2
255,280 - GFF227 0.76 -2.4
255,291 + GFF227 0.77 +1.8
255,336 + GFF227 0.81 -1.6
255,336 + GFF227 0.81 -1.0
255,336 + GFF227 0.81 -1.8
255,337 - GFF227 0.81 -0.5
255,337 - GFF227 0.81 -0.8
255,337 - GFF227 0.81 -1.1
255,337 - GFF227 0.81 +0.1
255,357 + GFF227 0.83 -3.3
255,357 + GFF227 0.83 -0.2
255,357 + GFF227 0.83 -0.4
255,357 + GFF227 0.83 +0.2
255,357 + GFF227 0.83 -0.7
255,358 - GFF227 0.83 +0.3
255,358 - GFF227 0.83 -0.9
255,358 - GFF227 0.83 -1.0
255,358 - GFF227 0.83 -1.0
255,358 - GFF227 0.83 +0.3
255,358 - GFF227 0.83 -1.0
255,358 - GFF227 0.83 -1.0
255,358 - GFF227 0.83 -0.8
255,361 + GFF227 0.83 +0.1
255,361 + GFF227 0.83 -3.1
255,361 + GFF227 0.83 +1.7
255,361 + GFF227 0.83 +0.3
255,361 + GFF227 0.83 -1.2
255,362 - GFF227 0.84 -2.9
255,362 - GFF227 0.84 -0.8
255,362 - GFF227 0.84 -2.8
255,372 + GFF227 0.85 -3.0
255,373 - GFF227 0.85 -0.9
255,373 - GFF227 0.85 +0.1
255,511 + -1.7
255,511 + -0.5
255,511 + -1.0
255,511 + -1.3
255,511 + -0.2
255,511 + -2.8
255,511 + -1.2
255,710 + -1.8
255,710 + -1.9
255,710 + -1.4
255,710 + -0.8
255,710 + +0.1
255,710 + -2.2
255,710 + -2.4
255,710 + -0.8
255,710 + -0.2
255,710 + -2.8
255,710 + -1.1
255,711 - -0.1
255,711 - -2.8
255,711 - -0.5
255,711 - -0.4
255,711 - -2.9
255,711 - -1.8
255,711 - -2.8
255,711 - -1.7
255,711 - -0.1
255,711 - +2.2
255,711 - -1.7
255,711 - -1.0
255,714 + -2.4
255,714 + +0.8
255,714 + -0.8
255,715 - -1.6
255,715 - -1.5
255,715 - +0.2
255,715 - -2.2
255,715 - -1.4
255,715 - -0.8
255,765 + +0.9
255,765 + -1.6
255,765 + -2.7
255,765 + -1.2
255,766 - -2.8
255,766 - -0.6
255,766 - -0.6
255,766 - -1.2
255,766 - -0.6
255,790 - GFF228 0.11 -1.6
255,814 - GFF228 0.13 -0.7
255,857 - GFF228 0.17 +1.8
255,993 + GFF228 0.30 -1.1
255,993 + GFF228 0.30 -0.2
255,993 + GFF228 0.30 +0.4
255,993 + GFF228 0.30 -1.0
255,993 + GFF228 0.30 -0.1
255,993 + GFF228 0.30 -1.7
255,994 - GFF228 0.30 -0.3
255,994 - GFF228 0.30 -0.9
255,994 - GFF228 0.30 -1.2
255,994 - GFF228 0.30 -0.6
255,994 - GFF228 0.30 -0.5
255,994 - GFF228 0.30 -3.0
255,994 - GFF228 0.30 -2.6
256,098 + GFF228 0.40 -1.0
256,099 - GFF228 0.40 -1.8
256,099 - GFF228 0.40 -3.1
256,123 + GFF228 0.43 -1.0
256,230 + GFF228 0.53 -0.6
256,231 - GFF228 0.53 -1.8
256,321 - GFF228 0.62 -0.8
256,321 - GFF228 0.62 -0.6
256,321 - GFF228 0.62 -2.0
256,321 - GFF228 0.62 -2.3
256,333 - GFF228 0.63 -1.6
256,486 - GFF228 0.77 -0.2
256,486 - GFF228 0.77 +0.8
256,486 - GFF228 0.77 +0.5

Or see this region's nucleotide sequence