Strain Fitness in Variovorax sp. SCN45 around GFF2131

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2129 and GFF2130 are separated by 61 nucleotidesGFF2130 and GFF2131 overlap by 4 nucleotidesGFF2131 and GFF2132 overlap by 1 nucleotidesGFF2132 and GFF2133 are separated by 40 nucleotides GFF2129 - small multidrug resistance family (SMR) protein, at 178,519 to 178,854 GFF2129 GFF2130 - hypothetical protein, at 178,916 to 179,506 GFF2130 GFF2131 - Putative protease, at 179,503 to 181,353 GFF2131 GFF2132 - Thiol:disulfide interchange protein DsbC, at 181,353 to 182,075 GFF2132 GFF2133 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 182,116 to 183,243 GFF2133 Position (kb) 179 180 181 182Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 178.506 kb on + strandat 178.507 kb on - strandat 178.507 kb on - strandat 178.507 kb on - strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.531 kb on + strandat 178.532 kb on - strandat 178.537 kb on + strandat 178.537 kb on + strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.538 kb on - strandat 178.639 kb on + strand, within GFF2129at 178.640 kb on - strand, within GFF2129at 178.640 kb on - strand, within GFF2129at 178.699 kb on + strand, within GFF2129at 178.699 kb on + strand, within GFF2129at 178.946 kb on + strandat 178.946 kb on + strandat 178.946 kb on + strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 178.947 kb on - strandat 179.282 kb on + strand, within GFF2130at 179.282 kb on + strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.283 kb on - strand, within GFF2130at 179.396 kb on + strand, within GFF2130at 179.397 kb on - strand, within GFF2130at 179.504 kb on + strandat 179.505 kb on - strandat 179.648 kb on + strandat 179.648 kb on + strandat 179.648 kb on + strandat 179.649 kb on - strandat 179.649 kb on - strandat 179.954 kb on + strand, within GFF2131at 179.954 kb on + strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 179.955 kb on - strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.119 kb on + strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.120 kb on - strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.122 kb on + strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.123 kb on - strand, within GFF2131at 180.161 kb on + strand, within GFF2131at 180.161 kb on + strand, within GFF2131at 180.162 kb on - strand, within GFF2131at 180.162 kb on - strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.164 kb on + strand, within GFF2131at 180.165 kb on - strand, within GFF2131at 180.165 kb on - strand, within GFF2131at 180.263 kb on + strand, within GFF2131at 180.311 kb on + strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.312 kb on - strand, within GFF2131at 180.314 kb on + strand, within GFF2131at 180.314 kb on + strand, within GFF2131at 180.314 kb on + strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.315 kb on - strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.353 kb on + strand, within GFF2131at 180.368 kb on + strand, within GFF2131at 180.368 kb on + strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.369 kb on - strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.425 kb on + strand, within GFF2131at 180.426 kb on - strand, within GFF2131at 180.426 kb on - strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.458 kb on + strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.459 kb on - strand, within GFF2131at 180.551 kb on + strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.585 kb on - strand, within GFF2131at 180.821 kb on + strand, within GFF2131at 180.822 kb on - strand, within GFF2131at 180.822 kb on - strand, within GFF2131at 180.822 kb on - strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.040 kb on + strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.041 kb on - strand, within GFF2131at 181.175 kb on + strandat 181.175 kb on + strandat 181.176 kb on - strandat 181.176 kb on - strandat 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.459 kb on + strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.460 kb on - strand, within GFF2132at 181.628 kb on - strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.639 kb on + strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.640 kb on - strand, within GFF2132at 181.690 kb on + strand, within GFF2132at 181.690 kb on + strand, within GFF2132at 181.691 kb on - strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.864 kb on + strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.865 kb on - strand, within GFF2132at 181.885 kb on + strand, within GFF2132at 181.885 kb on + strand, within GFF2132at 181.885 kb on + strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.886 kb on - strand, within GFF2132at 181.919 kb on - strand, within GFF2132at 182.052 kb on + strandat 182.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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178,506 + -0.2
178,507 - +0.5
178,507 - -1.9
178,507 - +1.8
178,531 + +1.6
178,531 + -0.8
178,531 + +1.3
178,531 + -1.1
178,531 + +0.4
178,531 + -1.6
178,531 + -0.4
178,531 + -1.0
178,531 + +0.5
178,532 - -2.5
178,537 + -0.3
178,537 + -0.2
178,538 - -3.5
178,538 - -2.6
178,538 - -0.5
178,538 - -0.9
178,538 - +0.8
178,639 + GFF2129 0.36 -1.4
178,640 - GFF2129 0.36 -1.0
178,640 - GFF2129 0.36 -2.3
178,699 + GFF2129 0.54 +3.3
178,699 + GFF2129 0.54 -1.8
178,946 + -0.7
178,946 + +0.0
178,946 + -0.8
178,947 - -1.1
178,947 - -2.7
178,947 - +3.1
178,947 - -3.4
178,947 - -1.5
179,282 + GFF2130 0.62 -0.5
179,282 + GFF2130 0.62 +1.4
179,283 - GFF2130 0.62 -0.5
179,283 - GFF2130 0.62 +2.2
179,283 - GFF2130 0.62 -2.2
179,283 - GFF2130 0.62 -0.4
179,283 - GFF2130 0.62 -0.7
179,283 - GFF2130 0.62 -0.8
179,396 + GFF2130 0.81 +0.4
179,397 - GFF2130 0.81 -0.5
179,504 + +0.0
179,505 - +0.6
179,648 + +0.0
179,648 + -1.1
179,648 + -1.1
179,649 - -0.6
179,649 - -2.6
179,954 + GFF2131 0.24 -0.8
179,954 + GFF2131 0.24 +0.0
179,955 - GFF2131 0.24 -2.3
179,955 - GFF2131 0.24 -1.7
179,955 - GFF2131 0.24 -0.6
179,955 - GFF2131 0.24 -2.8
180,119 + GFF2131 0.33 +1.7
180,119 + GFF2131 0.33 -0.0
180,119 + GFF2131 0.33 +1.4
180,119 + GFF2131 0.33 -1.0
180,120 - GFF2131 0.33 -0.7
180,120 - GFF2131 0.33 -0.2
180,120 - GFF2131 0.33 +0.4
180,120 - GFF2131 0.33 -1.3
180,120 - GFF2131 0.33 -1.8
180,122 + GFF2131 0.33 -0.8
180,122 + GFF2131 0.33 -1.4
180,122 + GFF2131 0.33 -0.2
180,122 + GFF2131 0.33 -3.0
180,123 - GFF2131 0.33 +1.2
180,123 - GFF2131 0.33 +1.0
180,123 - GFF2131 0.33 -2.1
180,123 - GFF2131 0.33 -0.5
180,123 - GFF2131 0.33 -0.9
180,123 - GFF2131 0.33 +0.1
180,123 - GFF2131 0.33 +0.4
180,123 - GFF2131 0.33 +0.0
180,123 - GFF2131 0.33 -1.8
180,123 - GFF2131 0.33 -0.3
180,123 - GFF2131 0.33 -1.9
180,123 - GFF2131 0.33 +0.2
180,161 + GFF2131 0.36 +0.2
180,161 + GFF2131 0.36 -1.9
180,162 - GFF2131 0.36 -1.4
180,162 - GFF2131 0.36 -3.9
180,164 + GFF2131 0.36 -0.4
180,164 + GFF2131 0.36 -1.2
180,164 + GFF2131 0.36 +0.1
180,164 + GFF2131 0.36 -1.3
180,164 + GFF2131 0.36 +1.1
180,164 + GFF2131 0.36 -0.1
180,164 + GFF2131 0.36 +0.5
180,165 - GFF2131 0.36 -2.3
180,165 - GFF2131 0.36 +1.5
180,263 + GFF2131 0.41 +0.9
180,311 + GFF2131 0.44 +0.5
180,312 - GFF2131 0.44 +0.1
180,312 - GFF2131 0.44 -1.2
180,312 - GFF2131 0.44 -2.2
180,312 - GFF2131 0.44 -1.1
180,314 + GFF2131 0.44 -1.5
180,314 + GFF2131 0.44 +0.4
180,314 + GFF2131 0.44 -1.3
180,315 - GFF2131 0.44 -0.1
180,315 - GFF2131 0.44 -0.6
180,315 - GFF2131 0.44 -0.5
180,315 - GFF2131 0.44 +3.1
180,315 - GFF2131 0.44 -1.3
180,353 + GFF2131 0.46 -1.2
180,353 + GFF2131 0.46 +1.4
180,353 + GFF2131 0.46 -2.6
180,368 + GFF2131 0.47 +1.0
180,368 + GFF2131 0.47 +0.3
180,369 - GFF2131 0.47 -1.0
180,369 - GFF2131 0.47 +0.7
180,369 - GFF2131 0.47 +0.3
180,369 - GFF2131 0.47 +0.5
180,369 - GFF2131 0.47 -0.9
180,425 + GFF2131 0.50 +0.8
180,425 + GFF2131 0.50 -0.2
180,425 + GFF2131 0.50 +0.8
180,425 + GFF2131 0.50 +0.1
180,425 + GFF2131 0.50 -0.2
180,425 + GFF2131 0.50 -0.4
180,425 + GFF2131 0.50 -0.6
180,426 - GFF2131 0.50 -0.2
180,426 - GFF2131 0.50 -2.6
180,458 + GFF2131 0.52 -1.8
180,458 + GFF2131 0.52 +1.4
180,458 + GFF2131 0.52 -1.3
180,458 + GFF2131 0.52 -0.6
180,459 - GFF2131 0.52 -1.9
180,459 - GFF2131 0.52 +0.7
180,459 - GFF2131 0.52 -3.3
180,459 - GFF2131 0.52 +0.5
180,459 - GFF2131 0.52 +0.4
180,551 + GFF2131 0.57 -0.2
180,585 - GFF2131 0.58 -1.7
180,585 - GFF2131 0.58 -0.5
180,585 - GFF2131 0.58 +1.7
180,585 - GFF2131 0.58 +0.2
180,821 + GFF2131 0.71 -0.9
180,822 - GFF2131 0.71 -0.8
180,822 - GFF2131 0.71 +0.8
180,822 - GFF2131 0.71 -1.9
181,040 + GFF2131 0.83 +0.2
181,040 + GFF2131 0.83 -1.0
181,040 + GFF2131 0.83 +0.1
181,040 + GFF2131 0.83 -1.1
181,041 - GFF2131 0.83 -0.3
181,041 - GFF2131 0.83 +0.9
181,041 - GFF2131 0.83 -1.1
181,041 - GFF2131 0.83 -0.6
181,041 - GFF2131 0.83 -0.2
181,041 - GFF2131 0.83 -1.1
181,175 + +0.1
181,175 + -0.7
181,176 - -0.7
181,176 - +1.4
181,459 + GFF2132 0.15 -0.8
181,459 + GFF2132 0.15 -0.8
181,459 + GFF2132 0.15 +0.9
181,459 + GFF2132 0.15 -0.4
181,459 + GFF2132 0.15 +2.0
181,459 + GFF2132 0.15 -0.6
181,460 - GFF2132 0.15 -0.6
181,460 - GFF2132 0.15 +1.0
181,460 - GFF2132 0.15 +0.3
181,460 - GFF2132 0.15 +0.8
181,628 - GFF2132 0.38 -1.0
181,639 + GFF2132 0.40 +0.2
181,639 + GFF2132 0.40 +2.6
181,639 + GFF2132 0.40 -0.1
181,639 + GFF2132 0.40 -1.8
181,640 - GFF2132 0.40 -3.2
181,640 - GFF2132 0.40 +0.0
181,640 - GFF2132 0.40 -0.6
181,640 - GFF2132 0.40 +0.2
181,640 - GFF2132 0.40 +1.6
181,690 + GFF2132 0.47 +1.7
181,690 + GFF2132 0.47 -2.8
181,691 - GFF2132 0.47 +2.4
181,864 + GFF2132 0.71 -0.2
181,864 + GFF2132 0.71 -0.0
181,864 + GFF2132 0.71 -1.3
181,864 + GFF2132 0.71 +0.5
181,864 + GFF2132 0.71 -0.1
181,865 - GFF2132 0.71 -0.6
181,865 - GFF2132 0.71 -1.8
181,865 - GFF2132 0.71 +0.2
181,865 - GFF2132 0.71 -1.5
181,865 - GFF2132 0.71 -0.3
181,865 - GFF2132 0.71 +2.8
181,865 - GFF2132 0.71 -0.6
181,865 - GFF2132 0.71 -1.4
181,865 - GFF2132 0.71 -1.5
181,885 + GFF2132 0.74 +1.4
181,885 + GFF2132 0.74 +0.5
181,885 + GFF2132 0.74 -1.5
181,886 - GFF2132 0.74 +0.8
181,886 - GFF2132 0.74 -1.6
181,886 - GFF2132 0.74 -2.8
181,886 - GFF2132 0.74 -0.1
181,919 - GFF2132 0.78 +0.7
182,052 + -1.0
182,053 - -3.2

Or see this region's nucleotide sequence