Strain Fitness in Variovorax sp. SCN45 around GFF2093

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
139,230	-		GFF2091	0.25	-1.4
139,535	+		GFF2091	0.57	-2.9
139,535	+		GFF2091	0.57	+2.0
139,535	+		GFF2091	0.57	-0.8
139,823	+		GFF2091	0.87	-1.0
139,823	+		GFF2091	0.87	+1.0
139,824	-		GFF2091	0.87	+0.3
139,946	+				-1.5
139,946	+				-1.6
140,061	-				-1.8
140,061	-				-1.1
140,113	+				-3.0
140,113	+				+0.5
140,113	+				+2.2
140,113	+				+1.4
140,114	-				-1.3
140,114	-				-1.7
140,114	-				+2.4
140,116	+				-2.1
140,116	+				+0.4
140,116	+				-2.6
140,116	+				+0.0
140,116	+				+1.4
140,116	+				-1.7
140,117	-				+0.2
140,117	-				-0.7
140,117	-				+1.2
140,359	+		GFF2093	0.17	-1.2
140,359	+		GFF2093	0.17	-1.0
140,359	+		GFF2093	0.17	-1.2
140,359	+		GFF2093	0.17	-0.1
140,359	+		GFF2093	0.17	-1.6
140,359	+		GFF2093	0.17	-1.4
140,359	+		GFF2093	0.17	-1.1
140,359	+		GFF2093	0.17	-0.6
140,359	+		GFF2093	0.17	+0.2
140,359	+		GFF2093	0.17	+1.1
140,359	+		GFF2093	0.17	+0.8
140,359	+		GFF2093	0.17	+0.0
140,360	-		GFF2093	0.17	+3.2
140,360	-		GFF2093	0.17	-0.5
140,360	-		GFF2093	0.17	+2.4
140,360	-		GFF2093	0.17	-0.2
140,360	-		GFF2093	0.17	-0.4
140,360	-		GFF2093	0.17	-0.6
140,360	-		GFF2093	0.17	-1.3
140,360	-		GFF2093	0.17	+1.0
140,360	-		GFF2093	0.17	+0.8
140,360	-		GFF2093	0.17	+0.4
140,443	+		GFF2093	0.22	-1.4
140,443	+		GFF2093	0.22	+0.4
140,443	+		GFF2093	0.22	+0.4
140,443	+		GFF2093	0.22	-0.8
140,443	+		GFF2093	0.22	-0.4
140,443	+		GFF2093	0.22	+0.1
140,444	-		GFF2093	0.22	+0.5
140,444	-		GFF2093	0.22	-0.3
140,511	+		GFF2093	0.25	+2.7
140,511	+		GFF2093	0.25	+0.8
140,511	+		GFF2093	0.25	+2.0
140,511	+		GFF2093	0.25	+0.5
140,512	-		GFF2093	0.26	+0.7
140,512	-		GFF2093	0.26	+1.0
140,512	-		GFF2093	0.26	-0.2
140,512	-		GFF2093	0.26	+0.9
140,641	+		GFF2093	0.33	-1.7
140,641	+		GFF2093	0.33	-1.2
140,641	+		GFF2093	0.33	-1.5
140,641	+		GFF2093	0.33	+1.2
140,641	+		GFF2093	0.33	-0.8
140,641	+		GFF2093	0.33	-0.2
140,641	+		GFF2093	0.33	-1.9
140,642	-		GFF2093	0.33	+2.0
140,642	-		GFF2093	0.33	-0.7
140,642	-		GFF2093	0.33	+1.6
140,706	+		GFF2093	0.37	-2.7
140,706	+		GFF2093	0.37	-0.5
140,706	+		GFF2093	0.37	-0.2
140,706	+		GFF2093	0.37	-2.0
140,707	-		GFF2093	0.37	-0.3
140,707	-		GFF2093	0.37	-2.4
141,046	+		GFF2093	0.56	+0.6
141,046	+		GFF2093	0.56	-0.6
141,046	+		GFF2093	0.56	+3.1
141,046	+		GFF2093	0.56	-1.4
141,047	-		GFF2093	0.56	+2.4
141,047	-		GFF2093	0.56	-0.5
141,047	-		GFF2093	0.56	+0.9
141,104	-		GFF2093	0.59	-1.7
141,172	+		GFF2093	0.63	+0.0
141,173	-		GFF2093	0.63	-0.2
141,173	-		GFF2093	0.63	+0.3
141,187	+		GFF2093	0.64	+1.0
141,188	-		GFF2093	0.64	+0.5
141,188	-		GFF2093	0.64	-0.8
141,292	+		GFF2093	0.70	+3.3
141,292	+		GFF2093	0.70	+0.5
141,293	-		GFF2093	0.70	+0.6
141,361	+		GFF2093	0.74	+0.1
141,361	+		GFF2093	0.74	-0.0
141,361	+		GFF2093	0.74	-1.8
141,362	-		GFF2093	0.74	+2.7
141,421	+		GFF2093	0.78	+0.1
141,421	+		GFF2093	0.78	-1.3
141,421	+		GFF2093	0.78	+0.1
141,421	+		GFF2093	0.78	+0.4
141,421	+		GFF2093	0.78	+0.6
141,421	+		GFF2093	0.78	-0.8
141,422	-		GFF2093	0.78	+1.2
141,422	-		GFF2093	0.78	+1.4
141,422	-		GFF2093	0.78	-1.5
141,422	-		GFF2093	0.78	+2.4
141,422	-		GFF2093	0.78	+0.8
141,422	-		GFF2093	0.78	-0.4
141,422	-		GFF2093	0.78	+0.5
141,496	+		GFF2093	0.82	+0.2
141,496	+		GFF2093	0.82	-2.0
141,496	+		GFF2093	0.82	-0.2
141,497	-		GFF2093	0.82	-0.8
141,497	-		GFF2093	0.82	-2.3
141,497	-		GFF2093	0.82	+0.8
141,499	+		GFF2093	0.82	-1.7
141,500	-		GFF2093	0.82	+0.0
141,500	-		GFF2093	0.82	-0.4
141,512	-		GFF2093	0.83	+1.6
141,596	-		GFF2093	0.88	+0.0
141,607	+		GFF2093	0.88	+1.0
141,607	+		GFF2093	0.88	-0.5
141,607	+		GFF2093	0.88	-0.4
141,608	-		GFF2093	0.88	+1.7
141,608	-		GFF2093	0.88	+2.2
141,608	-		GFF2093	0.88	-0.8
141,697	+				-0.8
141,697	+				-0.2
141,698	-				+0.6
141,698	-				-2.3
141,698	-				+1.2
141,698	-				-2.0
142,147	+		GFF2094	0.28	+0.2
142,148	-		GFF2094	0.28	-0.6
142,255	+		GFF2094	0.40	+1.8
142,255	+		GFF2094	0.40	+0.0
142,256	-		GFF2094	0.40	-1.0
142,256	-		GFF2094	0.40	+0.5
142,387	+		GFF2094	0.56	+0.0
142,388	-		GFF2094	0.56	-0.1
142,468	+		GFF2094	0.65	+0.5
142,486	+		GFF2094	0.67	+1.0
142,486	+		GFF2094	0.67	+0.0
142,487	-		GFF2094	0.67	+0.3
142,487	-		GFF2094	0.67	-1.3
142,520	-		GFF2094	0.71	-1.3
142,520	-		GFF2094	0.71	+2.8
142,520	-		GFF2094	0.71	+0.8
142,520	-		GFF2094	0.71	+0.2
142,633	+		GFF2094	0.84	-0.1
142,633	+		GFF2094	0.84	-1.6