Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2045 and GFF2046 are separated by 90 nucleotides GFF2046 and GFF2047 overlap by 4 nucleotides GFF2047 and GFF2048 overlap by 4 nucleotides GFF2048 and GFF2049 are separated by 32 nucleotides
GFF2045 - Peptide chain release factor 3, at 93,149 to 94,777
GFF2045
GFF2046 - no description, at 94,868 to 95,476
GFF2046
GFF2047 - Polyhydroxyalkanoic acid synthase, at 95,473 to 96,546
GFF2047
GFF2048 - hypothetical protein, at 96,543 to 96,950
GFF2048
GFF2049 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 96,983 to 97,903
GFF2049
Position (kb) 95
96
97 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 94.488 kb on + strand, within GFF2045 at 94.488 kb on + strand, within GFF2045 at 94.488 kb on + strand, within GFF2045 at 94.488 kb on + strand, within GFF2045 at 94.552 kb on - strand, within GFF2045 at 94.552 kb on - strand, within GFF2045 at 94.552 kb on - strand, within GFF2045 at 94.896 kb on + strand at 94.897 kb on - strand at 94.966 kb on + strand, within GFF2046 at 94.966 kb on + strand, within GFF2046 at 94.966 kb on + strand, within GFF2046 at 94.966 kb on + strand, within GFF2046 at 94.967 kb on - strand, within GFF2046 at 95.246 kb on + strand, within GFF2046 at 95.247 kb on - strand, within GFF2046 at 95.464 kb on - strand at 95.627 kb on + strand, within GFF2047 at 95.628 kb on - strand, within GFF2047 at 95.628 kb on - strand, within GFF2047 at 95.771 kb on + strand, within GFF2047 at 95.771 kb on + strand, within GFF2047 at 95.771 kb on + strand, within GFF2047 at 95.772 kb on - strand, within GFF2047 at 95.772 kb on - strand, within GFF2047 at 95.772 kb on - strand, within GFF2047 at 95.972 kb on + strand, within GFF2047 at 96.078 kb on - strand, within GFF2047 at 96.185 kb on + strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.243 kb on - strand, within GFF2047 at 96.251 kb on + strand, within GFF2047 at 96.251 kb on + strand, within GFF2047 at 96.252 kb on - strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.270 kb on - strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.309 kb on - strand, within GFF2047 at 96.309 kb on - strand, within GFF2047 at 96.354 kb on - strand, within GFF2047 at 96.354 kb on - strand, within GFF2047 at 96.377 kb on + strand, within GFF2047 at 96.378 kb on - strand, within GFF2047 at 96.383 kb on + strand, within GFF2047 at 96.383 kb on + strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 97.362 kb on + strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 94,488 + GFF2045 0.82 +2.7 94,488 + GFF2045 0.82 -1.3 94,488 + GFF2045 0.82 -1.2 94,488 + GFF2045 0.82 -1.1 94,552 - GFF2045 0.86 -1.2 94,552 - GFF2045 0.86 +1.6 94,552 - GFF2045 0.86 -1.0 94,896 + -3.1 94,897 - +0.0 94,966 + GFF2046 0.16 +0.1 94,966 + GFF2046 0.16 -1.6 94,966 + GFF2046 0.16 +0.2 94,966 + GFF2046 0.16 -0.6 94,967 - GFF2046 0.16 +2.5 95,246 + GFF2046 0.62 -3.8 95,247 - GFF2046 0.62 +1.2 95,464 - -1.5 95,627 + GFF2047 0.14 -0.8 95,628 - GFF2047 0.14 -1.0 95,628 - GFF2047 0.14 -1.0 95,771 + GFF2047 0.28 +1.5 95,771 + GFF2047 0.28 -0.8 95,771 + GFF2047 0.28 +0.3 95,772 - GFF2047 0.28 +0.9 95,772 - GFF2047 0.28 -1.4 95,772 - GFF2047 0.28 +0.0 95,972 + GFF2047 0.46 -0.4 96,078 - GFF2047 0.56 +0.5 96,185 + GFF2047 0.66 +0.0 96,186 - GFF2047 0.66 -0.3 96,186 - GFF2047 0.66 -0.7 96,186 - GFF2047 0.66 -0.8 96,242 + GFF2047 0.72 +0.7 96,242 + GFF2047 0.72 -0.7 96,242 + GFF2047 0.72 -0.0 96,242 + GFF2047 0.72 -2.2 96,242 + GFF2047 0.72 +0.1 96,242 + GFF2047 0.72 +1.4 96,243 - GFF2047 0.72 +0.9 96,251 + GFF2047 0.72 -1.6 96,251 + GFF2047 0.72 -2.8 96,252 - GFF2047 0.73 +0.5 96,269 + GFF2047 0.74 -0.9 96,269 + GFF2047 0.74 +0.0 96,269 + GFF2047 0.74 +0.8 96,270 - GFF2047 0.74 -0.4 96,308 + GFF2047 0.78 -0.8 96,308 + GFF2047 0.78 -1.3 96,308 + GFF2047 0.78 +1.1 96,309 - GFF2047 0.78 -1.1 96,309 - GFF2047 0.78 -0.4 96,354 - GFF2047 0.82 -1.1 96,354 - GFF2047 0.82 +0.4 96,377 + GFF2047 0.84 -1.2 96,378 - GFF2047 0.84 -0.2 96,383 + GFF2047 0.85 +2.0 96,383 + GFF2047 0.85 +1.2 96,384 - GFF2047 0.85 +0.8 96,384 - GFF2047 0.85 -0.2 96,384 - GFF2047 0.85 -2.0 96,384 - GFF2047 0.85 +2.2 97,362 + GFF2049 0.41 -0.6 97,363 - GFF2049 0.41 -0.4 97,363 - GFF2049 0.41 -0.2 97,363 - GFF2049 0.41 -2.5 97,363 - GFF2049 0.41 -1.3
Or see this region's nucleotide sequence