Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1996 and GFF1997 are separated by 19 nucleotides GFF1997 and GFF1998 are separated by 147 nucleotides GFF1998 and GFF1999 are separated by 55 nucleotides GFF1999 and GFF2000 are separated by 223 nucleotides
GFF1996 - Indoleacetamide hydrolase (EC 3.5.1.-), at 38,969 to 40,489
GFF1996
GFF1997 - no description, at 40,509 to 41,273
GFF1997
GFF1998 - Two-component system sensor histidine kinase, at 41,421 to 43,208
GFF1998
GFF1999 - GTG start codon, at 43,264 to 43,698
GFF1999
GFF2000 - Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17), at 43,922 to 45,805
GFF2000
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.487 kb on + strand at 40.487 kb on + strand at 40.591 kb on + strand, within GFF1997 at 40.591 kb on + strand, within GFF1997 at 40.591 kb on + strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 40.592 kb on - strand, within GFF1997 at 41.269 kb on + strand at 41.270 kb on - strand at 41.270 kb on - strand at 41.270 kb on - strand at 41.300 kb on + strand at 41.313 kb on + strand at 41.314 kb on - strand at 41.487 kb on + strand at 41.487 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.544 kb on + strand at 41.545 kb on - strand at 41.545 kb on - strand at 41.545 kb on - strand at 41.829 kb on + strand, within GFF1998 at 41.829 kb on + strand, within GFF1998 at 41.829 kb on + strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.830 kb on - strand, within GFF1998 at 41.844 kb on + strand, within GFF1998 at 41.844 kb on + strand, within GFF1998 at 41.844 kb on + strand, within GFF1998 at 41.845 kb on - strand, within GFF1998 at 41.845 kb on - strand, within GFF1998 at 41.845 kb on - strand, within GFF1998 at 42.028 kb on - strand, within GFF1998 at 42.028 kb on - strand, within GFF1998 at 42.519 kb on + strand, within GFF1998 at 42.519 kb on + strand, within GFF1998 at 42.520 kb on - strand, within GFF1998 at 42.520 kb on - strand, within GFF1998 at 43.149 kb on + strand at 43.149 kb on + strand at 43.150 kb on - strand at 43.206 kb on + strand at 43.253 kb on + strand at 43.447 kb on + strand, within GFF1999 at 43.664 kb on - strand at 43.800 kb on + strand at 43.808 kb on + strand at 43.904 kb on + strand at 43.904 kb on + strand at 43.905 kb on - strand at 43.905 kb on - strand at 43.905 kb on - strand at 43.905 kb on - strand at 43.905 kb on - strand at 43.905 kb on - strand at 44.072 kb on + strand at 44.073 kb on - strand at 44.073 kb on - strand at 44.073 kb on - strand at 44.090 kb on + strand at 44.090 kb on + strand at 44.091 kb on - strand at 44.091 kb on - strand at 44.181 kb on - strand, within GFF2000 at 44.181 kb on - strand, within GFF2000
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 40,487 + +1.0 40,487 + +0.3 40,591 + GFF1997 0.11 -0.9 40,591 + GFF1997 0.11 +1.4 40,591 + GFF1997 0.11 +1.4 40,592 - GFF1997 0.11 +0.7 40,592 - GFF1997 0.11 +0.8 40,592 - GFF1997 0.11 -0.5 40,592 - GFF1997 0.11 +1.1 40,592 - GFF1997 0.11 -3.2 41,269 + +0.2 41,270 - -1.0 41,270 - -0.6 41,270 - -1.4 41,300 + -0.5 41,313 + -1.5 41,314 - -1.9 41,487 + -0.4 41,487 + +0.3 41,544 + -3.0 41,544 + +0.1 41,544 + -0.7 41,544 + -1.7 41,544 + -1.5 41,544 + +0.4 41,545 - +0.6 41,545 - -1.1 41,545 - -2.6 41,829 + GFF1998 0.23 +0.0 41,829 + GFF1998 0.23 -0.4 41,829 + GFF1998 0.23 -0.4 41,830 - GFF1998 0.23 -1.0 41,830 - GFF1998 0.23 +2.4 41,830 - GFF1998 0.23 +1.4 41,830 - GFF1998 0.23 -1.1 41,830 - GFF1998 0.23 -1.5 41,830 - GFF1998 0.23 -1.3 41,830 - GFF1998 0.23 -1.6 41,830 - GFF1998 0.23 -0.6 41,844 + GFF1998 0.24 -2.8 41,844 + GFF1998 0.24 +0.4 41,844 + GFF1998 0.24 +0.8 41,845 - GFF1998 0.24 -0.6 41,845 - GFF1998 0.24 -0.6 41,845 - GFF1998 0.24 -0.3 42,028 - GFF1998 0.34 +0.1 42,028 - GFF1998 0.34 -1.1 42,519 + GFF1998 0.61 -0.4 42,519 + GFF1998 0.61 -1.4 42,520 - GFF1998 0.61 -1.1 42,520 - GFF1998 0.61 -1.5 43,149 + -1.7 43,149 + +0.0 43,150 - +0.8 43,206 + -0.5 43,253 + -3.5 43,447 + GFF1999 0.42 -1.1 43,664 - +0.2 43,800 + -1.5 43,808 + -1.1 43,904 + +1.0 43,904 + -1.3 43,905 - +0.6 43,905 - -1.6 43,905 - -0.2 43,905 - +2.0 43,905 - +1.4 43,905 - -1.1 44,072 + -3.3 44,073 - +1.8 44,073 - +0.6 44,073 - -0.6 44,090 + -2.7 44,090 + +1.3 44,091 - -2.8 44,091 - -1.6 44,181 - GFF2000 0.14 -0.3 44,181 - GFF2000 0.14 -0.7
Or see this region's nucleotide sequence