Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1920 and GFF1921 overlap by 4 nucleotides GFF1921 and GFF1922 overlap by 4 nucleotides GFF1922 and GFF1923 are separated by 83 nucleotides
GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077
GFF1920
GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063
GFF1921
GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304
GFF1922
GFF1923 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 603,388 to 604,416
GFF1923
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.274 kb on - strand, within GFF1921 at 601.285 kb on + strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.468 kb on + strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.862 kb on - strand, within GFF1921 at 602.131 kb on + strand at 602.131 kb on + strand at 602.131 kb on + strand at 602.132 kb on - strand at 602.132 kb on - strand at 602.257 kb on - strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.788 kb on - strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 603.091 kb on - strand, within GFF1922 at 603.358 kb on - strand at 603.549 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.608 kb on - strand, within GFF1923 at 603.841 kb on + strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.865 kb on + strand, within GFF1923 at 603.866 kb on - strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.988 kb on + strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.995 kb on - strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.187 kb on - strand, within GFF1923 at 604.187 kb on - strand, within GFF1923
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 601,274 - GFF1921 0.20 -0.5 601,285 + GFF1921 0.21 +0.0 601,286 - GFF1921 0.21 -3.0 601,286 - GFF1921 0.21 -2.6 601,468 + GFF1921 0.40 +0.0 601,469 - GFF1921 0.40 -3.3 601,469 - GFF1921 0.40 +1.4 601,469 - GFF1921 0.40 +0.0 601,469 - GFF1921 0.40 -1.3 601,469 - GFF1921 0.40 -0.0 601,472 - GFF1921 0.40 -0.1 601,472 - GFF1921 0.40 +1.6 601,595 - GFF1921 0.53 -0.6 601,595 - GFF1921 0.53 -1.6 601,603 + GFF1921 0.53 +0.7 601,603 + GFF1921 0.53 -0.7 601,603 + GFF1921 0.53 -1.6 601,604 - GFF1921 0.54 +0.4 601,604 - GFF1921 0.54 +0.3 601,862 - GFF1921 0.80 -0.1 602,131 + +1.1 602,131 + -0.1 602,131 + -0.8 602,132 - -0.6 602,132 - -2.3 602,257 - GFF1922 0.16 -1.2 602,478 + GFF1922 0.34 -1.0 602,478 + GFF1922 0.34 -0.4 602,788 - GFF1922 0.58 +0.3 602,994 + GFF1922 0.75 -2.6 602,994 + GFF1922 0.75 +0.5 602,994 + GFF1922 0.75 -0.2 602,995 - GFF1922 0.75 -2.6 602,995 - GFF1922 0.75 +1.3 602,995 - GFF1922 0.75 -0.3 602,995 - GFF1922 0.75 -2.0 603,091 - GFF1922 0.83 +0.0 603,358 - +2.4 603,549 + GFF1923 0.16 +2.2 603,553 + GFF1923 0.16 +0.0 603,553 + GFF1923 0.16 +1.9 603,553 + GFF1923 0.16 -2.6 603,553 + GFF1923 0.16 +0.2 603,553 + GFF1923 0.16 +1.4 603,553 + GFF1923 0.16 +0.2 603,554 - GFF1923 0.16 -1.6 603,554 - GFF1923 0.16 -2.2 603,554 - GFF1923 0.16 -0.6 603,554 - GFF1923 0.16 -1.1 603,554 - GFF1923 0.16 +0.7 603,608 - GFF1923 0.21 +0.3 603,841 + GFF1923 0.44 +1.4 603,842 - GFF1923 0.44 -1.9 603,842 - GFF1923 0.44 -1.8 603,865 + GFF1923 0.46 -0.9 603,866 - GFF1923 0.46 -0.8 603,868 + GFF1923 0.47 -0.9 603,868 + GFF1923 0.47 -2.1 603,869 - GFF1923 0.47 -1.2 603,869 - GFF1923 0.47 -2.1 603,869 - GFF1923 0.47 +0.1 603,988 + GFF1923 0.58 -1.5 603,989 - GFF1923 0.58 -0.8 603,989 - GFF1923 0.58 +0.0 603,989 - GFF1923 0.58 +0.1 603,989 - GFF1923 0.58 -1.6 603,989 - GFF1923 0.58 +0.1 603,995 - GFF1923 0.59 +0.1 604,078 + GFF1923 0.67 +0.9 604,078 + GFF1923 0.67 -1.5 604,079 - GFF1923 0.67 -2.1 604,079 - GFF1923 0.67 +0.0 604,186 + GFF1923 0.78 +1.8 604,186 + GFF1923 0.78 -2.2 604,186 + GFF1923 0.78 +0.6 604,186 + GFF1923 0.78 -2.8 604,186 + GFF1923 0.78 +0.2 604,186 + GFF1923 0.78 +0.4 604,187 - GFF1923 0.78 +0.4 604,187 - GFF1923 0.78 -0.5
Or see this region's nucleotide sequence