Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1911 and GFF1912 are separated by 0 nucleotides GFF1912 and GFF1913 are separated by 106 nucleotides GFF1913 and GFF1914 are separated by 78 nucleotides
GFF1911 - ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 591,103 to 592,194
GFF1911
GFF1912 - Transcriptional regulator, LysR family, at 592,195 to 593,076
GFF1912
GFF1913 - Short-chain dehydrogenase, at 593,183 to 593,788
GFF1913
GFF1914 - Guanine deaminase (EC 3.5.4.3), at 593,867 to 595,153
GFF1914
Position (kb) 592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 591.208 kb on + strand at 591.208 kb on + strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.209 kb on - strand at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.304 kb on + strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.305 kb on - strand, within GFF1911 at 591.401 kb on - strand, within GFF1911 at 591.401 kb on - strand, within GFF1911 at 591.466 kb on + strand, within GFF1911 at 591.505 kb on + strand, within GFF1911 at 591.506 kb on - strand, within GFF1911 at 591.508 kb on + strand, within GFF1911 at 591.508 kb on + strand, within GFF1911 at 591.508 kb on + strand, within GFF1911 at 591.509 kb on - strand, within GFF1911 at 591.509 kb on - strand, within GFF1911 at 591.509 kb on - strand, within GFF1911 at 591.572 kb on - strand, within GFF1911 at 591.572 kb on - strand, within GFF1911 at 591.814 kb on + strand, within GFF1911 at 591.815 kb on - strand, within GFF1911 at 591.883 kb on + strand, within GFF1911 at 591.883 kb on + strand, within GFF1911 at 591.884 kb on - strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.886 kb on + strand, within GFF1911 at 591.887 kb on - strand, within GFF1911 at 591.887 kb on - strand, within GFF1911 at 591.887 kb on - strand, within GFF1911 at 591.992 kb on + strand, within GFF1911 at 591.992 kb on + strand, within GFF1911 at 591.993 kb on - strand, within GFF1911 at 591.993 kb on - strand, within GFF1911 at 591.993 kb on - strand, within GFF1911 at 592.192 kb on + strand at 592.192 kb on + strand at 592.192 kb on + strand at 592.192 kb on + strand at 592.193 kb on - strand at 592.196 kb on + strand at 592.196 kb on + strand at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.736 kb on + strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.737 kb on - strand, within GFF1912 at 592.772 kb on + strand, within GFF1912 at 592.772 kb on + strand, within GFF1912 at 592.773 kb on - strand, within GFF1912 at 592.773 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 593.076 kb on + strand at 593.120 kb on + strand at 593.157 kb on + strand at 593.157 kb on + strand at 593.158 kb on - strand at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.675 kb on + strand, within GFF1913 at 593.675 kb on + strand, within GFF1913 at 593.676 kb on - strand, within GFF1913 at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.733 kb on - strand at 593.733 kb on - strand at 593.733 kb on - strand at 593.804 kb on - strand at 593.804 kb on - strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.814 kb on + strand at 593.814 kb on + strand at 593.814 kb on + strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.850 kb on + strand at 593.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 591,208 + -1.6 591,208 + -0.8 591,209 - -1.5 591,209 - +0.2 591,209 - -0.2 591,209 - -1.5 591,209 - -0.9 591,209 - -1.2 591,304 + GFF1911 0.18 -0.3 591,304 + GFF1911 0.18 -0.5 591,304 + GFF1911 0.18 -2.6 591,304 + GFF1911 0.18 +0.7 591,304 + GFF1911 0.18 +0.3 591,304 + GFF1911 0.18 +1.5 591,304 + GFF1911 0.18 +0.6 591,304 + GFF1911 0.18 +0.7 591,304 + GFF1911 0.18 +0.4 591,305 - GFF1911 0.18 +0.8 591,305 - GFF1911 0.18 +0.7 591,305 - GFF1911 0.18 -0.1 591,305 - GFF1911 0.18 +0.5 591,305 - GFF1911 0.18 +0.9 591,305 - GFF1911 0.18 +0.0 591,305 - GFF1911 0.18 +0.8 591,401 - GFF1911 0.27 -0.2 591,401 - GFF1911 0.27 +0.7 591,466 + GFF1911 0.33 +0.5 591,505 + GFF1911 0.37 -3.3 591,506 - GFF1911 0.37 -0.8 591,508 + GFF1911 0.37 +0.8 591,508 + GFF1911 0.37 +0.2 591,508 + GFF1911 0.37 -1.6 591,509 - GFF1911 0.37 -0.2 591,509 - GFF1911 0.37 -0.5 591,509 - GFF1911 0.37 -0.4 591,572 - GFF1911 0.43 -1.1 591,572 - GFF1911 0.43 -1.7 591,814 + GFF1911 0.65 +1.0 591,815 - GFF1911 0.65 -1.4 591,883 + GFF1911 0.71 -0.5 591,883 + GFF1911 0.71 +1.4 591,884 - GFF1911 0.72 -0.5 591,886 + GFF1911 0.72 +1.2 591,886 + GFF1911 0.72 -0.7 591,886 + GFF1911 0.72 -0.2 591,886 + GFF1911 0.72 -1.4 591,886 + GFF1911 0.72 -2.7 591,886 + GFF1911 0.72 -0.5 591,886 + GFF1911 0.72 -0.9 591,886 + GFF1911 0.72 +0.9 591,886 + GFF1911 0.72 -1.5 591,887 - GFF1911 0.72 +1.4 591,887 - GFF1911 0.72 +0.8 591,887 - GFF1911 0.72 +0.6 591,992 + GFF1911 0.81 -0.1 591,992 + GFF1911 0.81 -0.8 591,993 - GFF1911 0.82 +1.8 591,993 - GFF1911 0.82 +0.0 591,993 - GFF1911 0.82 +1.8 592,192 + -0.8 592,192 + -0.9 592,192 + -1.0 592,192 + -0.4 592,193 - -1.9 592,196 + +0.0 592,196 + +0.5 592,736 + GFF1912 0.61 -0.2 592,736 + GFF1912 0.61 -0.2 592,736 + GFF1912 0.61 -1.2 592,736 + GFF1912 0.61 -0.5 592,736 + GFF1912 0.61 +0.2 592,736 + GFF1912 0.61 -0.8 592,736 + GFF1912 0.61 -0.2 592,737 - GFF1912 0.61 +1.2 592,737 - GFF1912 0.61 -1.3 592,737 - GFF1912 0.61 -2.3 592,737 - GFF1912 0.61 +1.1 592,737 - GFF1912 0.61 -1.3 592,737 - GFF1912 0.61 +0.2 592,737 - GFF1912 0.61 -0.8 592,772 + GFF1912 0.65 -1.6 592,772 + GFF1912 0.65 -1.0 592,773 - GFF1912 0.66 -1.2 592,773 - GFF1912 0.66 -2.2 592,884 - GFF1912 0.78 -0.8 592,884 - GFF1912 0.78 -1.6 592,884 - GFF1912 0.78 -2.0 593,076 + +0.2 593,120 + -1.6 593,157 + -2.7 593,157 + +1.0 593,158 - -0.6 593,333 + GFF1913 0.25 +0.5 593,333 + GFF1913 0.25 +1.4 593,333 + GFF1913 0.25 +2.1 593,333 + GFF1913 0.25 +1.9 593,333 + GFF1913 0.25 -1.6 593,333 + GFF1913 0.25 -2.5 593,333 + GFF1913 0.25 +1.6 593,333 + GFF1913 0.25 -2.0 593,333 + GFF1913 0.25 -1.2 593,333 + GFF1913 0.25 -1.4 593,334 - GFF1913 0.25 -3.3 593,334 - GFF1913 0.25 +1.0 593,334 - GFF1913 0.25 -0.1 593,334 - GFF1913 0.25 -1.5 593,675 + GFF1913 0.81 -1.1 593,675 + GFF1913 0.81 -0.9 593,676 - GFF1913 0.81 -1.0 593,732 + -0.9 593,732 + +0.2 593,732 + -1.0 593,732 + +1.1 593,732 + +0.2 593,733 - -1.6 593,733 - -1.8 593,733 - -2.6 593,804 - -1.5 593,804 - -2.6 593,805 + -0.2 593,805 + -0.3 593,805 + -1.7 593,805 + -1.0 593,805 + +0.7 593,805 + +0.4 593,805 + +0.8 593,805 + +0.7 593,805 + -0.7 593,805 + +0.4 593,805 + -1.2 593,806 - -0.8 593,806 - +1.6 593,806 - +1.1 593,806 - -2.3 593,806 - +0.6 593,806 - +0.6 593,806 - +0.4 593,806 - +0.4 593,814 + -1.8 593,814 + +1.6 593,814 + +1.6 593,815 - +0.8 593,815 - +1.2 593,815 - +0.2 593,815 - -1.3 593,850 + +0.5 593,850 + -0.1
Or see this region's nucleotide sequence