Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1906 and GFF1907 are separated by 332 nucleotides GFF1907 and GFF1908 are separated by 120 nucleotides GFF1908 and GFF1909 are separated by 46 nucleotides
GFF1906 - no description, at 586,837 to 587,694
GFF1906
GFF1907 - Transcriptional regulator, AraC family, at 588,027 to 588,974
GFF1907
GFF1908 - Short-chain dehydrogenases of various substrate specificities, at 589,095 to 589,904
GFF1908
GFF1909 - FIG00537389: hypothetical protein, at 589,951 to 590,607
GFF1909
Position (kb) 588
589 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 587.042 kb on + strand, within GFF1906 at 587.043 kb on - strand, within GFF1906 at 587.117 kb on + strand, within GFF1906 at 587.118 kb on - strand, within GFF1906 at 587.118 kb on - strand, within GFF1906 at 587.183 kb on + strand, within GFF1906 at 587.183 kb on + strand, within GFF1906 at 587.184 kb on - strand, within GFF1906 at 587.184 kb on - strand, within GFF1906 at 587.195 kb on + strand, within GFF1906 at 587.216 kb on + strand, within GFF1906 at 587.216 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.309 kb on + strand, within GFF1906 at 587.310 kb on - strand, within GFF1906 at 587.310 kb on - strand, within GFF1906 at 587.315 kb on + strand, within GFF1906 at 587.315 kb on + strand, within GFF1906 at 587.315 kb on + strand, within GFF1906 at 587.316 kb on - strand, within GFF1906 at 587.316 kb on - strand, within GFF1906 at 587.316 kb on - strand, within GFF1906 at 587.447 kb on + strand, within GFF1906 at 587.504 kb on + strand, within GFF1906 at 587.504 kb on + strand, within GFF1906 at 587.505 kb on - strand, within GFF1906 at 587.505 kb on - strand, within GFF1906 at 587.505 kb on - strand, within GFF1906 at 587.505 kb on - strand, within GFF1906 at 587.505 kb on - strand, within GFF1906 at 587.546 kb on + strand, within GFF1906 at 587.547 kb on - strand, within GFF1906 at 587.780 kb on - strand at 587.780 kb on - strand at 587.794 kb on - strand at 587.794 kb on - strand at 587.794 kb on - strand at 587.979 kb on + strand at 587.979 kb on + strand at 587.979 kb on + strand at 588.003 kb on + strand at 588.004 kb on - strand at 588.004 kb on - strand at 588.129 kb on + strand, within GFF1907 at 588.129 kb on + strand, within GFF1907 at 588.129 kb on + strand, within GFF1907 at 588.130 kb on - strand, within GFF1907 at 588.204 kb on + strand, within GFF1907 at 588.205 kb on - strand, within GFF1907 at 588.205 kb on - strand, within GFF1907 at 588.504 kb on + strand, within GFF1907 at 588.579 kb on + strand, within GFF1907 at 588.580 kb on - strand, within GFF1907 at 588.580 kb on - strand, within GFF1907 at 588.580 kb on - strand, within GFF1907 at 588.666 kb on + strand, within GFF1907 at 588.667 kb on - strand, within GFF1907 at 588.667 kb on - strand, within GFF1907 at 588.667 kb on - strand, within GFF1907 at 588.980 kb on + strand at 588.981 kb on - strand at 588.981 kb on - strand at 588.981 kb on - strand at 589.017 kb on + strand at 589.019 kb on + strand at 589.020 kb on - strand at 589.029 kb on - strand at 589.159 kb on - strand at 589.462 kb on - strand, within GFF1908 at 589.676 kb on + strand, within GFF1908 at 589.694 kb on - strand, within GFF1908 at 589.934 kb on + strand at 589.934 kb on + strand at 589.934 kb on + strand at 589.935 kb on - strand at 589.935 kb on - strand at 589.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 587,042 + GFF1906 0.24 -0.8 587,043 - GFF1906 0.24 +1.0 587,117 + GFF1906 0.33 +0.9 587,118 - GFF1906 0.33 -0.8 587,118 - GFF1906 0.33 -0.3 587,183 + GFF1906 0.40 +0.7 587,183 + GFF1906 0.40 -0.2 587,184 - GFF1906 0.40 -0.9 587,184 - GFF1906 0.40 -4.1 587,195 + GFF1906 0.42 -1.1 587,216 + GFF1906 0.44 -0.8 587,216 + GFF1906 0.44 -1.6 587,309 + GFF1906 0.55 -0.4 587,309 + GFF1906 0.55 -0.9 587,309 + GFF1906 0.55 +1.9 587,309 + GFF1906 0.55 +2.6 587,309 + GFF1906 0.55 -1.1 587,309 + GFF1906 0.55 +0.3 587,309 + GFF1906 0.55 +2.4 587,309 + GFF1906 0.55 +1.4 587,309 + GFF1906 0.55 -0.2 587,310 - GFF1906 0.55 -0.2 587,310 - GFF1906 0.55 -0.2 587,315 + GFF1906 0.56 -1.0 587,315 + GFF1906 0.56 -0.1 587,315 + GFF1906 0.56 -1.2 587,316 - GFF1906 0.56 -1.8 587,316 - GFF1906 0.56 -0.1 587,316 - GFF1906 0.56 -0.8 587,447 + GFF1906 0.71 +0.4 587,504 + GFF1906 0.78 +1.5 587,504 + GFF1906 0.78 -1.6 587,505 - GFF1906 0.78 +0.0 587,505 - GFF1906 0.78 -0.5 587,505 - GFF1906 0.78 -0.8 587,505 - GFF1906 0.78 -1.0 587,505 - GFF1906 0.78 -1.0 587,546 + GFF1906 0.83 -2.7 587,547 - GFF1906 0.83 -1.1 587,780 - -0.1 587,780 - -2.9 587,794 - +4.5 587,794 - +0.1 587,794 - -0.5 587,979 + -1.0 587,979 + -1.6 587,979 + -0.5 588,003 + -0.4 588,004 - -2.2 588,004 - -1.6 588,129 + GFF1907 0.11 +1.2 588,129 + GFF1907 0.11 +2.4 588,129 + GFF1907 0.11 -0.8 588,130 - GFF1907 0.11 +0.4 588,204 + GFF1907 0.19 -0.4 588,205 - GFF1907 0.19 -0.3 588,205 - GFF1907 0.19 +2.7 588,504 + GFF1907 0.50 -1.6 588,579 + GFF1907 0.58 -1.0 588,580 - GFF1907 0.58 -1.7 588,580 - GFF1907 0.58 -1.3 588,580 - GFF1907 0.58 -0.1 588,666 + GFF1907 0.67 -0.7 588,667 - GFF1907 0.68 -1.4 588,667 - GFF1907 0.68 +1.1 588,667 - GFF1907 0.68 +0.5 588,980 + +0.0 588,981 - +1.9 588,981 - -1.1 588,981 - +0.8 589,017 + +1.1 589,019 + +0.4 589,020 - -2.0 589,029 - +0.4 589,159 - -3.1 589,462 - GFF1908 0.45 +0.2 589,676 + GFF1908 0.72 -1.8 589,694 - GFF1908 0.74 -1.6 589,934 + -1.2 589,934 + +1.2 589,934 + -0.5 589,935 - -0.2 589,935 - -2.4 589,935 - -0.6
Or see this region's nucleotide sequence