Strain Fitness in Variovorax sp. SCN45 around GFF1841

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1840 and GFF1841 are separated by 4 nucleotidesGFF1841 and GFF1842 are separated by 103 nucleotides GFF1840 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4), at 507,889 to 509,535 GFF1840 GFF1841 - Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4), at 509,540 to 512,008 GFF1841 GFF1842 - Transcriptional regulator, LysR family, at 512,112 to 513,092 GFF1842 Position (kb) 509 510 511 512 513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 508.561 kb on + strand, within GFF1840at 508.561 kb on + strand, within GFF1840at 508.561 kb on + strand, within GFF1840at 508.562 kb on - strand, within GFF1840at 508.562 kb on - strand, within GFF1840at 508.595 kb on + strand, within GFF1840at 508.726 kb on + strand, within GFF1840at 508.726 kb on + strand, within GFF1840at 508.726 kb on + strand, within GFF1840at 508.726 kb on + strand, within GFF1840at 508.726 kb on + strand, within GFF1840at 508.726 kb on + strand, within GFF1840at 508.727 kb on - strand, within GFF1840at 508.727 kb on - strand, within GFF1840at 508.727 kb on - strand, within GFF1840at 508.727 kb on - strand, within GFF1840at 508.727 kb on - strand, within GFF1840at 508.727 kb on - strand, within GFF1840at 508.727 kb on - strand, within GFF1840at 508.780 kb on + strand, within GFF1840at 508.780 kb on + strand, within GFF1840at 508.780 kb on + strand, within GFF1840at 508.780 kb on + strand, within GFF1840at 508.780 kb on + strand, within GFF1840at 508.781 kb on - strand, within GFF1840at 508.781 kb on - strand, within GFF1840at 508.781 kb on - strand, within GFF1840at 508.781 kb on - strand, within GFF1840at 508.781 kb on - strand, within GFF1840at 508.781 kb on - strand, within GFF1840at 508.781 kb on - strand, within GFF1840at 509.020 kb on + strand, within GFF1840at 509.020 kb on + strand, within GFF1840at 509.020 kb on + strand, within GFF1840at 509.021 kb on - strand, within GFF1840at 509.021 kb on - strand, within GFF1840at 509.021 kb on - strand, within GFF1840at 509.021 kb on - strand, within GFF1840at 509.021 kb on - strand, within GFF1840at 509.029 kb on + strand, within GFF1840at 509.029 kb on + strand, within GFF1840at 509.030 kb on - strand, within GFF1840at 509.030 kb on - strand, within GFF1840at 509.030 kb on - strand, within GFF1840at 509.030 kb on - strand, within GFF1840at 509.030 kb on - strand, within GFF1840at 509.368 kb on + strand, within GFF1840at 509.594 kb on + strandat 509.594 kb on + strandat 509.594 kb on + strandat 509.594 kb on + strandat 509.594 kb on + strandat 509.595 kb on - strandat 509.720 kb on + strandat 509.720 kb on + strandat 509.720 kb on + strandat 509.720 kb on + strandat 509.720 kb on + strandat 509.720 kb on + strandat 509.720 kb on + strandat 509.721 kb on - strandat 509.721 kb on - strandat 509.721 kb on - strandat 509.721 kb on - strandat 509.721 kb on - strandat 509.721 kb on - strandat 509.721 kb on - strandat 509.721 kb on - strandat 509.945 kb on + strand, within GFF1841at 510.086 kb on + strand, within GFF1841at 510.086 kb on + strand, within GFF1841at 510.225 kb on - strand, within GFF1841at 510.225 kb on - strand, within GFF1841at 510.245 kb on + strand, within GFF1841at 510.245 kb on + strand, within GFF1841at 510.245 kb on + strand, within GFF1841at 510.245 kb on + strand, within GFF1841at 510.246 kb on - strand, within GFF1841at 510.524 kb on + strand, within GFF1841at 510.525 kb on - strand, within GFF1841at 510.530 kb on + strand, within GFF1841at 510.530 kb on + strand, within GFF1841at 510.531 kb on - strand, within GFF1841at 510.542 kb on + strand, within GFF1841at 510.543 kb on - strand, within GFF1841at 510.543 kb on - strand, within GFF1841at 510.659 kb on + strand, within GFF1841at 510.660 kb on - strand, within GFF1841at 510.834 kb on - strand, within GFF1841at 510.834 kb on - strand, within GFF1841at 511.068 kb on + strand, within GFF1841at 511.068 kb on + strand, within GFF1841at 511.068 kb on + strand, within GFF1841at 511.068 kb on + strand, within GFF1841at 511.068 kb on + strand, within GFF1841at 511.069 kb on - strand, within GFF1841at 511.069 kb on - strand, within GFF1841at 511.069 kb on - strand, within GFF1841at 511.069 kb on - strand, within GFF1841at 511.069 kb on - strand, within GFF1841at 511.069 kb on - strand, within GFF1841at 511.069 kb on - strand, within GFF1841at 511.071 kb on - strand, within GFF1841at 511.071 kb on - strand, within GFF1841at 511.418 kb on + strand, within GFF1841at 511.418 kb on + strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.454 kb on + strand, within GFF1841at 511.454 kb on + strand, within GFF1841at 511.454 kb on + strand, within GFF1841at 511.455 kb on - strand, within GFF1841at 511.455 kb on - strand, within GFF1841at 511.508 kb on + strand, within GFF1841at 511.508 kb on + strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.076 kb on + strandat 512.076 kb on + strandat 512.076 kb on + strandat 512.077 kb on - strandat 512.220 kb on + strand, within GFF1842at 512.220 kb on + strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.439 kb on + strand, within GFF1842at 512.439 kb on + strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.539 kb on - strand, within GFF1842at 512.539 kb on - strand, within GFF1842at 512.874 kb on + strand, within GFF1842at 512.874 kb on + strand, within GFF1842at 512.875 kb on - strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
508,561 + GFF1840 0.41 -2.0
508,561 + GFF1840 0.41 -2.0
508,561 + GFF1840 0.41 +0.6
508,562 - GFF1840 0.41 -0.2
508,562 - GFF1840 0.41 +1.4
508,595 + GFF1840 0.43 -1.0
508,726 + GFF1840 0.51 -1.6
508,726 + GFF1840 0.51 +1.4
508,726 + GFF1840 0.51 -2.0
508,726 + GFF1840 0.51 -2.3
508,726 + GFF1840 0.51 +0.5
508,726 + GFF1840 0.51 +0.5
508,727 - GFF1840 0.51 -1.9
508,727 - GFF1840 0.51 -1.6
508,727 - GFF1840 0.51 +0.2
508,727 - GFF1840 0.51 -0.3
508,727 - GFF1840 0.51 -2.7
508,727 - GFF1840 0.51 +1.4
508,727 - GFF1840 0.51 +0.0
508,780 + GFF1840 0.54 -2.4
508,780 + GFF1840 0.54 -0.9
508,780 + GFF1840 0.54 -0.6
508,780 + GFF1840 0.54 -1.0
508,780 + GFF1840 0.54 -1.9
508,781 - GFF1840 0.54 +0.0
508,781 - GFF1840 0.54 +0.9
508,781 - GFF1840 0.54 -0.1
508,781 - GFF1840 0.54 +0.4
508,781 - GFF1840 0.54 -0.4
508,781 - GFF1840 0.54 -2.1
508,781 - GFF1840 0.54 +1.2
509,020 + GFF1840 0.69 +0.8
509,020 + GFF1840 0.69 -0.5
509,020 + GFF1840 0.69 +1.2
509,021 - GFF1840 0.69 -2.0
509,021 - GFF1840 0.69 +0.0
509,021 - GFF1840 0.69 +0.4
509,021 - GFF1840 0.69 -1.2
509,021 - GFF1840 0.69 -1.8
509,029 + GFF1840 0.69 -0.7
509,029 + GFF1840 0.69 -1.0
509,030 - GFF1840 0.69 -2.9
509,030 - GFF1840 0.69 -0.6
509,030 - GFF1840 0.69 +0.4
509,030 - GFF1840 0.69 -1.5
509,030 - GFF1840 0.69 -0.2
509,368 + GFF1840 0.90 -0.2
509,594 + +1.4
509,594 + -1.9
509,594 + +0.2
509,594 + -2.2
509,594 + -1.4
509,595 - -0.4
509,720 + +0.7
509,720 + +2.2
509,720 + -2.2
509,720 + -1.6
509,720 + -0.2
509,720 + +1.1
509,720 + +2.4
509,721 - +1.5
509,721 - -1.6
509,721 - +0.0
509,721 - -0.4
509,721 - +0.4
509,721 - -0.3
509,721 - +1.4
509,721 - -0.6
509,945 + GFF1841 0.16 -2.0
510,086 + GFF1841 0.22 +0.5
510,086 + GFF1841 0.22 -0.7
510,225 - GFF1841 0.28 +1.9
510,225 - GFF1841 0.28 -1.6
510,245 + GFF1841 0.29 +0.5
510,245 + GFF1841 0.29 -0.5
510,245 + GFF1841 0.29 +1.4
510,245 + GFF1841 0.29 -2.2
510,246 - GFF1841 0.29 -1.1
510,524 + GFF1841 0.40 -1.8
510,525 - GFF1841 0.40 -0.2
510,530 + GFF1841 0.40 +0.2
510,530 + GFF1841 0.40 -0.5
510,531 - GFF1841 0.40 +0.4
510,542 + GFF1841 0.41 +0.0
510,543 - GFF1841 0.41 +1.4
510,543 - GFF1841 0.41 -0.6
510,659 + GFF1841 0.45 -0.0
510,660 - GFF1841 0.45 -0.5
510,834 - GFF1841 0.52 -1.7
510,834 - GFF1841 0.52 +1.0
511,068 + GFF1841 0.62 +0.7
511,068 + GFF1841 0.62 -0.7
511,068 + GFF1841 0.62 -0.9
511,068 + GFF1841 0.62 -3.2
511,068 + GFF1841 0.62 +1.5
511,069 - GFF1841 0.62 -1.2
511,069 - GFF1841 0.62 +0.4
511,069 - GFF1841 0.62 +1.4
511,069 - GFF1841 0.62 +0.4
511,069 - GFF1841 0.62 -2.8
511,069 - GFF1841 0.62 +0.8
511,069 - GFF1841 0.62 -2.6
511,071 - GFF1841 0.62 +0.2
511,071 - GFF1841 0.62 +0.8
511,418 + GFF1841 0.76 +0.5
511,418 + GFF1841 0.76 -0.6
511,419 - GFF1841 0.76 -1.8
511,419 - GFF1841 0.76 +2.4
511,419 - GFF1841 0.76 +0.2
511,419 - GFF1841 0.76 +0.7
511,454 + GFF1841 0.78 -0.2
511,454 + GFF1841 0.78 -1.2
511,454 + GFF1841 0.78 -1.0
511,455 - GFF1841 0.78 -0.2
511,455 - GFF1841 0.78 +0.0
511,508 + GFF1841 0.80 +0.9
511,508 + GFF1841 0.80 -2.1
511,509 - GFF1841 0.80 -0.2
511,509 - GFF1841 0.80 -0.4
511,509 - GFF1841 0.80 -0.2
511,509 - GFF1841 0.80 +1.4
511,511 + GFF1841 0.80 +0.4
511,511 + GFF1841 0.80 +1.4
511,511 + GFF1841 0.80 -2.1
511,511 + GFF1841 0.80 -0.9
511,511 + GFF1841 0.80 -1.3
511,512 - GFF1841 0.80 -2.9
511,512 - GFF1841 0.80 -0.9
511,512 - GFF1841 0.80 -2.2
511,512 - GFF1841 0.80 -0.1
511,514 + GFF1841 0.80 +0.0
511,514 + GFF1841 0.80 -0.2
511,514 + GFF1841 0.80 -3.9
511,514 + GFF1841 0.80 +2.2
511,514 + GFF1841 0.80 -2.9
511,514 + GFF1841 0.80 +0.3
511,515 - GFF1841 0.80 +1.8
511,515 - GFF1841 0.80 -3.5
511,515 - GFF1841 0.80 -2.3
511,515 - GFF1841 0.80 +0.6
511,515 - GFF1841 0.80 -3.1
511,739 + GFF1841 0.89 -2.2
511,739 + GFF1841 0.89 +0.1
511,739 + GFF1841 0.89 +0.5
511,739 + GFF1841 0.89 +0.3
511,739 + GFF1841 0.89 -3.1
511,739 + GFF1841 0.89 -0.5
511,739 + GFF1841 0.89 -0.6
511,740 - GFF1841 0.89 +0.9
511,740 - GFF1841 0.89 -0.2
511,740 - GFF1841 0.89 -1.2
511,740 - GFF1841 0.89 -0.2
511,740 - GFF1841 0.89 -2.2
511,740 - GFF1841 0.89 -1.8
512,074 + -0.9
512,074 + +1.1
512,074 + -1.8
512,074 + -2.1
512,074 + +2.2
512,074 + -0.5
512,075 - +1.4
512,075 - +1.1
512,075 - -1.2
512,075 - -1.6
512,075 - +0.7
512,075 - -0.5
512,076 + +0.3
512,076 + -0.5
512,076 + -0.3
512,077 - +0.2
512,220 + GFF1842 0.11 -1.2
512,220 + GFF1842 0.11 -2.0
512,221 - GFF1842 0.11 +0.4
512,221 - GFF1842 0.11 -1.0
512,221 - GFF1842 0.11 -1.2
512,221 - GFF1842 0.11 -0.8
512,221 - GFF1842 0.11 +1.6
512,221 - GFF1842 0.11 +0.8
512,439 + GFF1842 0.33 -0.3
512,439 + GFF1842 0.33 +0.2
512,440 - GFF1842 0.33 +0.8
512,440 - GFF1842 0.33 -2.7
512,440 - GFF1842 0.33 -3.3
512,440 - GFF1842 0.33 -2.0
512,440 - GFF1842 0.33 +1.1
512,440 - GFF1842 0.33 +0.2
512,440 - GFF1842 0.33 +1.4
512,538 + GFF1842 0.43 +4.9
512,538 + GFF1842 0.43 +0.4
512,538 + GFF1842 0.43 +0.7
512,538 + GFF1842 0.43 -0.9
512,539 - GFF1842 0.44 +0.8
512,539 - GFF1842 0.44 +0.5
512,874 + GFF1842 0.78 +0.2
512,874 + GFF1842 0.78 -0.4
512,875 - GFF1842 0.78 -0.6
512,946 + GFF1842 0.85 -1.3
512,946 + GFF1842 0.85 -1.2
512,946 + GFF1842 0.85 +0.5
512,946 + GFF1842 0.85 -1.5
512,946 + GFF1842 0.85 -1.7
512,946 + GFF1842 0.85 +0.1
512,946 + GFF1842 0.85 -2.0
512,946 + GFF1842 0.85 -0.5
512,947 - GFF1842 0.85 -1.5
512,947 - GFF1842 0.85 -0.6
512,947 - GFF1842 0.85 -1.0
512,947 - GFF1842 0.85 -2.0
512,947 - GFF1842 0.85 -0.3
512,947 - GFF1842 0.85 -1.6
512,947 - GFF1842 0.85 -0.0
512,947 - GFF1842 0.85 -0.0
512,947 - GFF1842 0.85 -0.0
512,947 - GFF1842 0.85 -1.3
512,947 - GFF1842 0.85 -1.6
512,947 - GFF1842 0.85 -0.5
512,947 - GFF1842 0.85 +1.6
512,947 - GFF1842 0.85 +0.7
512,949 + GFF1842 0.85 -0.2
512,949 + GFF1842 0.85 +0.3
512,949 + GFF1842 0.85 +2.1
512,949 + GFF1842 0.85 +0.4
512,949 + GFF1842 0.85 -0.5
512,949 + GFF1842 0.85 -3.9
512,950 - GFF1842 0.85 -0.0
512,950 - GFF1842 0.85 -0.5
512,950 - GFF1842 0.85 -0.2
512,950 - GFF1842 0.85 +0.4
512,950 - GFF1842 0.85 +1.2

Or see this region's nucleotide sequence