Strain Fitness in Variovorax sp. SCN45 around GFF1817

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1815 and GFF1816 are separated by 7 nucleotidesGFF1816 and GFF1817 are separated by 74 nucleotidesGFF1817 and GFF1818 are separated by 4 nucleotidesGFF1818 and GFF1819 are separated by 56 nucleotides GFF1815 - Uricase (urate oxidase) (EC 1.7.3.3), at 479,807 to 480,769 GFF1815 GFF1816 - Transcriptional regulator, GntR family, at 480,777 to 481,451 GFF1816 GFF1817 - 5-hydroxyisourate hydrolase (EC 3.5.2.17), at 481,526 to 481,876 GFF1817 GFF1818 - FIG00932412: hypothetical protein, at 481,881 to 482,378 GFF1818 GFF1819 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 482,435 to 483,244 GFF1819 Position (kb) 481 482Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.534 kb on + strand, within GFF1815at 480.535 kb on - strand, within GFF1815at 480.535 kb on - strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.651 kb on + strand, within GFF1815at 480.652 kb on - strand, within GFF1815at 480.652 kb on - strand, within GFF1815at 480.769 kb on + strandat 480.769 kb on + strandat 480.769 kb on + strandat 480.769 kb on + strandat 480.770 kb on - strandat 480.770 kb on - strandat 480.958 kb on + strand, within GFF1816at 480.959 kb on - strand, within GFF1816at 480.959 kb on - strand, within GFF1816at 481.454 kb on + strandat 481.454 kb on + strandat 481.454 kb on + strandat 481.454 kb on + strandat 481.454 kb on + strandat 481.454 kb on + strandat 481.454 kb on + strandat 481.476 kb on - strandat 481.545 kb on + strandat 481.546 kb on - strandat 481.595 kb on + strand, within GFF1817at 481.595 kb on + strand, within GFF1817at 481.596 kb on - strand, within GFF1817at 481.596 kb on - strand, within GFF1817at 481.673 kb on + strand, within GFF1817at 481.673 kb on + strand, within GFF1817at 481.703 kb on + strand, within GFF1817at 481.704 kb on - strand, within GFF1817at 481.730 kb on + strand, within GFF1817at 481.730 kb on + strand, within GFF1817at 481.820 kb on + strand, within GFF1817at 481.820 kb on + strand, within GFF1817at 481.820 kb on + strand, within GFF1817at 481.820 kb on + strand, within GFF1817at 481.820 kb on + strand, within GFF1817at 481.820 kb on + strand, within GFF1817at 481.820 kb on + strand, within GFF1817at 481.821 kb on - strand, within GFF1817at 481.821 kb on - strand, within GFF1817at 481.821 kb on - strand, within GFF1817at 481.821 kb on - strand, within GFF1817at 481.821 kb on - strand, within GFF1817at 481.853 kb on + strandat 481.853 kb on + strandat 481.853 kb on + strandat 481.853 kb on + strandat 481.853 kb on + strandat 481.854 kb on - strandat 481.854 kb on - strandat 481.854 kb on - strandat 481.854 kb on - strandat 481.862 kb on + strandat 481.863 kb on - strandat 482.152 kb on + strand, within GFF1818at 482.152 kb on + strand, within GFF1818at 482.152 kb on + strand, within GFF1818at 482.152 kb on + strand, within GFF1818at 482.152 kb on + strand, within GFF1818at 482.152 kb on + strand, within GFF1818at 482.152 kb on + strand, within GFF1818at 482.153 kb on - strand, within GFF1818at 482.153 kb on - strand, within GFF1818at 482.153 kb on - strand, within GFF1818at 482.153 kb on - strand, within GFF1818at 482.153 kb on - strand, within GFF1818at 482.153 kb on - strand, within GFF1818at 482.176 kb on + strand, within GFF1818at 482.176 kb on + strand, within GFF1818at 482.177 kb on - strand, within GFF1818at 482.177 kb on - strand, within GFF1818at 482.177 kb on - strand, within GFF1818at 482.177 kb on - strand, within GFF1818at 482.177 kb on - strand, within GFF1818at 482.177 kb on - strand, within GFF1818at 482.363 kb on + strandat 482.363 kb on + strandat 482.364 kb on - strandat 482.388 kb on + strandat 482.388 kb on + strandat 482.424 kb on + strandat 482.720 kb on + strand, within GFF1819

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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480,534 + GFF1815 0.75 -0.7
480,534 + GFF1815 0.75 +0.8
480,534 + GFF1815 0.75 -0.7
480,534 + GFF1815 0.75 -0.2
480,534 + GFF1815 0.75 +0.5
480,535 - GFF1815 0.76 +1.3
480,535 - GFF1815 0.76 -0.9
480,651 + GFF1815 0.88 +0.5
480,651 + GFF1815 0.88 -1.2
480,651 + GFF1815 0.88 +1.3
480,651 + GFF1815 0.88 +0.7
480,652 - GFF1815 0.88 -1.7
480,652 - GFF1815 0.88 -2.1
480,769 + -0.8
480,769 + +0.1
480,769 + +0.2
480,769 + +1.3
480,770 - -2.9
480,770 - -0.8
480,958 + GFF1816 0.27 -0.2
480,959 - GFF1816 0.27 -0.8
480,959 - GFF1816 0.27 -1.2
481,454 + +0.6
481,454 + -2.0
481,454 + -1.2
481,454 + -0.3
481,454 + -1.5
481,454 + +2.0
481,454 + -0.5
481,476 - -0.1
481,545 + -0.7
481,546 - +0.5
481,595 + GFF1817 0.20 +0.7
481,595 + GFF1817 0.20 -0.5
481,596 - GFF1817 0.20 -0.3
481,596 - GFF1817 0.20 -0.5
481,673 + GFF1817 0.42 -1.3
481,673 + GFF1817 0.42 -3.0
481,703 + GFF1817 0.50 +1.4
481,704 - GFF1817 0.51 +1.7
481,730 + GFF1817 0.58 -1.4
481,730 + GFF1817 0.58 -1.1
481,820 + GFF1817 0.84 -2.8
481,820 + GFF1817 0.84 +0.4
481,820 + GFF1817 0.84 +1.0
481,820 + GFF1817 0.84 +1.4
481,820 + GFF1817 0.84 -0.6
481,820 + GFF1817 0.84 -1.3
481,820 + GFF1817 0.84 -0.6
481,821 - GFF1817 0.84 +0.4
481,821 - GFF1817 0.84 -0.9
481,821 - GFF1817 0.84 -0.7
481,821 - GFF1817 0.84 -0.9
481,821 - GFF1817 0.84 +0.4
481,853 + +0.0
481,853 + -0.8
481,853 + -0.0
481,853 + -3.9
481,853 + -1.6
481,854 - -0.3
481,854 - -1.5
481,854 - -0.9
481,854 - +0.7
481,862 + +1.4
481,863 - -2.3
482,152 + GFF1818 0.54 -2.5
482,152 + GFF1818 0.54 -0.8
482,152 + GFF1818 0.54 -3.9
482,152 + GFF1818 0.54 +2.4
482,152 + GFF1818 0.54 -0.8
482,152 + GFF1818 0.54 -0.8
482,152 + GFF1818 0.54 +1.5
482,153 - GFF1818 0.55 -0.6
482,153 - GFF1818 0.55 -1.0
482,153 - GFF1818 0.55 -1.5
482,153 - GFF1818 0.55 -2.5
482,153 - GFF1818 0.55 -0.8
482,153 - GFF1818 0.55 +2.9
482,176 + GFF1818 0.59 -1.7
482,176 + GFF1818 0.59 -2.5
482,177 - GFF1818 0.59 +0.1
482,177 - GFF1818 0.59 -1.6
482,177 - GFF1818 0.59 -1.0
482,177 - GFF1818 0.59 -1.5
482,177 - GFF1818 0.59 +1.1
482,177 - GFF1818 0.59 -0.2
482,363 + -1.6
482,363 + -1.9
482,364 - +0.2
482,388 + -0.5
482,388 + +0.7
482,424 + -1.4
482,720 + GFF1819 0.35 -0.5

Or see this region's nucleotide sequence