Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1669 and GFF1670 overlap by 11 nucleotides GFF1670 and GFF1671 overlap by 4 nucleotides
GFF1669 - hypothetical protein, at 314,732 to 316,075
GFF1669
GFF1670 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 316,065 to 316,592
GFF1670
GFF1671 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 316,589 to 317,863
GFF1671
Position (kb) 316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 315.168 kb on + strand, within GFF1669 at 315.186 kb on + strand, within GFF1669 at 315.186 kb on + strand, within GFF1669 at 315.267 kb on + strand, within GFF1669 at 315.268 kb on - strand, within GFF1669 at 315.375 kb on + strand, within GFF1669 at 315.376 kb on - strand, within GFF1669 at 315.462 kb on + strand, within GFF1669 at 315.462 kb on + strand, within GFF1669 at 315.463 kb on - strand, within GFF1669 at 315.463 kb on - strand, within GFF1669 at 315.501 kb on + strand, within GFF1669 at 315.502 kb on - strand, within GFF1669 at 316.316 kb on - strand, within GFF1670 at 316.316 kb on - strand, within GFF1670 at 316.665 kb on + strand at 316.666 kb on - strand at 316.965 kb on + strand, within GFF1671 at 316.992 kb on + strand, within GFF1671 at 317.451 kb on + strand, within GFF1671 at 317.451 kb on + strand, within GFF1671 at 317.452 kb on - strand, within GFF1671 at 317.452 kb on - strand, within GFF1671 at 317.452 kb on - strand, within GFF1671 at 317.565 kb on + strand, within GFF1671 at 317.566 kb on - strand, within GFF1671
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 315,168 + GFF1669 0.32 +0.2 315,186 + GFF1669 0.34 +0.5 315,186 + GFF1669 0.34 -1.4 315,267 + GFF1669 0.40 -1.2 315,268 - GFF1669 0.40 +0.3 315,375 + GFF1669 0.48 -0.2 315,376 - GFF1669 0.48 +0.9 315,462 + GFF1669 0.54 -0.5 315,462 + GFF1669 0.54 -0.4 315,463 - GFF1669 0.54 +2.3 315,463 - GFF1669 0.54 -0.2 315,501 + GFF1669 0.57 -0.9 315,502 - GFF1669 0.57 +0.3 316,316 - GFF1670 0.48 -3.1 316,316 - GFF1670 0.48 -0.9 316,665 + -1.1 316,666 - -0.5 316,965 + GFF1671 0.29 +0.8 316,992 + GFF1671 0.32 -1.3 317,451 + GFF1671 0.68 +0.0 317,451 + GFF1671 0.68 +0.6 317,452 - GFF1671 0.68 -0.1 317,452 - GFF1671 0.68 -2.6 317,452 - GFF1671 0.68 -0.5 317,565 + GFF1671 0.77 +0.3 317,566 - GFF1671 0.77 -1.2
Or see this region's nucleotide sequence