Strain Fitness in Variovorax sp. SCN45 around GFF1543

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
139,835	-		GFF1542	0.66	-2.3
139,876	-		GFF1542	0.70	-1.8
139,876	-		GFF1542	0.70	-0.0
140,120	+				-1.3
140,120	+				-0.4
140,120	+				-2.2
140,121	-				-0.7
140,121	-				-0.5
140,121	-				+1.2
140,121	-				-0.4
140,121	-				-2.2
140,121	-				+1.6
140,121	-				+0.6
140,121	-				-0.0
140,121	-				-1.1
140,296	-		GFF1543	0.14	-0.5
140,364	+		GFF1543	0.22	+0.3
140,364	+		GFF1543	0.22	+1.3
140,365	-		GFF1543	0.22	-2.7
140,558	+		GFF1543	0.44	-1.3
140,559	-		GFF1543	0.44	-0.2
140,682	+		GFF1543	0.58	-1.8
140,683	-		GFF1543	0.58	+2.4
140,828	+		GFF1543	0.74	+1.1
140,829	-		GFF1543	0.74	-2.6
141,140	+				-0.7
141,141	-				-0.2
141,398	+		GFF1544	0.17	-1.7
141,398	+		GFF1544	0.17	-2.0
141,399	-		GFF1544	0.17	-0.7
141,399	-		GFF1544	0.17	-0.9
141,512	+		GFF1544	0.23	+1.8
141,512	+		GFF1544	0.23	-0.3
141,512	+		GFF1544	0.23	-1.1
141,513	-		GFF1544	0.23	-0.7
141,513	-		GFF1544	0.23	-0.1