Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1506 and GFF1507 are separated by 34 nucleotides GFF1507 and GFF1508 overlap by 4 nucleotides GFF1508 and GFF1509 overlap by 4 nucleotides
GFF1506 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 97,777 to 99,342
GFF1506
GFF1507 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 99,377 to 101,443
GFF1507
GFF1508 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 101,440 to 102,339
GFF1508
GFF1509 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 102,336 to 103,310
GFF1509
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 98.579 kb on + strand, within GFF1506 at 98.579 kb on + strand, within GFF1506 at 98.579 kb on + strand, within GFF1506 at 98.580 kb on - strand, within GFF1506 at 98.580 kb on - strand, within GFF1506 at 98.580 kb on - strand, within GFF1506 at 98.702 kb on + strand, within GFF1506 at 98.735 kb on + strand, within GFF1506 at 98.736 kb on - strand, within GFF1506 at 98.780 kb on + strand, within GFF1506 at 98.780 kb on + strand, within GFF1506 at 98.781 kb on - strand, within GFF1506 at 98.795 kb on + strand, within GFF1506 at 98.795 kb on + strand, within GFF1506 at 98.796 kb on - strand, within GFF1506 at 98.831 kb on + strand, within GFF1506 at 98.831 kb on + strand, within GFF1506 at 98.832 kb on - strand, within GFF1506 at 98.832 kb on - strand, within GFF1506 at 98.832 kb on - strand, within GFF1506 at 98.876 kb on + strand, within GFF1506 at 98.876 kb on + strand, within GFF1506 at 98.877 kb on - strand, within GFF1506 at 98.987 kb on + strand, within GFF1506 at 98.988 kb on - strand, within GFF1506 at 98.988 kb on - strand, within GFF1506 at 99.391 kb on - strand at 99.391 kb on - strand at 99.391 kb on - strand at 99.597 kb on + strand, within GFF1507 at 99.598 kb on - strand, within GFF1507 at 99.660 kb on + strand, within GFF1507 at 99.660 kb on + strand, within GFF1507 at 99.660 kb on + strand, within GFF1507 at 99.661 kb on - strand, within GFF1507 at 99.661 kb on - strand, within GFF1507 at 99.723 kb on + strand, within GFF1507 at 99.723 kb on + strand, within GFF1507 at 99.723 kb on + strand, within GFF1507 at 99.724 kb on - strand, within GFF1507 at 99.948 kb on + strand, within GFF1507 at 99.948 kb on + strand, within GFF1507 at 99.948 kb on + strand, within GFF1507 at 99.949 kb on - strand, within GFF1507 at 99.949 kb on - strand, within GFF1507 at 100.042 kb on - strand, within GFF1507 at 100.042 kb on - strand, within GFF1507 at 100.668 kb on + strand, within GFF1507 at 100.669 kb on - strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.731 kb on + strand, within GFF1507 at 100.732 kb on - strand, within GFF1507 at 100.732 kb on - strand, within GFF1507 at 101.546 kb on + strand, within GFF1508 at 101.547 kb on - strand, within GFF1508 at 101.570 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.771 kb on + strand, within GFF1508 at 101.820 kb on - strand, within GFF1508 at 101.820 kb on - strand, within GFF1508 at 101.822 kb on + strand, within GFF1508 at 101.822 kb on + strand, within GFF1508 at 101.822 kb on + strand, within GFF1508 at 101.823 kb on - strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.879 kb on + strand, within GFF1508 at 101.880 kb on - strand, within GFF1508 at 101.880 kb on - strand, within GFF1508 at 101.880 kb on - strand, within GFF1508 at 102.074 kb on + strand, within GFF1508 at 102.110 kb on + strand, within GFF1508 at 102.111 kb on - strand, within GFF1508 at 102.111 kb on - strand, within GFF1508 at 102.116 kb on + strand, within GFF1508 at 102.116 kb on + strand, within GFF1508 at 102.116 kb on + strand, within GFF1508 at 102.117 kb on - strand, within GFF1508 at 102.117 kb on - strand, within GFF1508 at 102.185 kb on + strand, within GFF1508 at 102.186 kb on - strand, within GFF1508 at 102.321 kb on - strand at 102.321 kb on - strand at 102.379 kb on + strand at 102.380 kb on - strand at 102.380 kb on - strand at 102.380 kb on - strand at 102.436 kb on + strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.437 kb on - strand, within GFF1509
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 98,579 + GFF1506 0.51 -0.6 98,579 + GFF1506 0.51 -0.4 98,579 + GFF1506 0.51 +0.9 98,580 - GFF1506 0.51 -1.4 98,580 - GFF1506 0.51 -2.3 98,580 - GFF1506 0.51 +0.8 98,702 + GFF1506 0.59 +2.0 98,735 + GFF1506 0.61 -0.8 98,736 - GFF1506 0.61 -0.0 98,780 + GFF1506 0.64 +2.1 98,780 + GFF1506 0.64 -1.8 98,781 - GFF1506 0.64 -0.3 98,795 + GFF1506 0.65 +0.6 98,795 + GFF1506 0.65 +1.5 98,796 - GFF1506 0.65 -0.0 98,831 + GFF1506 0.67 +1.3 98,831 + GFF1506 0.67 -1.6 98,832 - GFF1506 0.67 -0.9 98,832 - GFF1506 0.67 -1.0 98,832 - GFF1506 0.67 -0.7 98,876 + GFF1506 0.70 +0.7 98,876 + GFF1506 0.70 +1.6 98,877 - GFF1506 0.70 -1.4 98,987 + GFF1506 0.77 -2.4 98,988 - GFF1506 0.77 +0.1 98,988 - GFF1506 0.77 -0.4 99,391 - -0.5 99,391 - +0.3 99,391 - -0.5 99,597 + GFF1507 0.11 -2.7 99,598 - GFF1507 0.11 -0.4 99,660 + GFF1507 0.14 -0.9 99,660 + GFF1507 0.14 -2.7 99,660 + GFF1507 0.14 -2.2 99,661 - GFF1507 0.14 -0.2 99,661 - GFF1507 0.14 +1.3 99,723 + GFF1507 0.17 -0.9 99,723 + GFF1507 0.17 -0.5 99,723 + GFF1507 0.17 -0.0 99,724 - GFF1507 0.17 -0.4 99,948 + GFF1507 0.28 -1.3 99,948 + GFF1507 0.28 -1.5 99,948 + GFF1507 0.28 -0.3 99,949 - GFF1507 0.28 -0.6 99,949 - GFF1507 0.28 -1.3 100,042 - GFF1507 0.32 -0.5 100,042 - GFF1507 0.32 -4.1 100,668 + GFF1507 0.62 -1.3 100,669 - GFF1507 0.63 +0.8 100,731 + GFF1507 0.66 -0.6 100,731 + GFF1507 0.66 +1.3 100,731 + GFF1507 0.66 -2.1 100,731 + GFF1507 0.66 +1.9 100,731 + GFF1507 0.66 -1.2 100,731 + GFF1507 0.66 -2.7 100,731 + GFF1507 0.66 +1.8 100,732 - GFF1507 0.66 -0.5 100,732 - GFF1507 0.66 +1.1 101,546 + GFF1508 0.12 +1.2 101,547 - GFF1508 0.12 -1.7 101,570 + GFF1508 0.14 -0.8 101,771 + GFF1508 0.37 +1.4 101,771 + GFF1508 0.37 +0.1 101,771 + GFF1508 0.37 -3.0 101,771 + GFF1508 0.37 +0.7 101,820 - GFF1508 0.42 +0.8 101,820 - GFF1508 0.42 -0.6 101,822 + GFF1508 0.42 -1.3 101,822 + GFF1508 0.42 +1.5 101,822 + GFF1508 0.42 -0.3 101,823 - GFF1508 0.43 +0.2 101,879 + GFF1508 0.49 -1.2 101,879 + GFF1508 0.49 -0.7 101,879 + GFF1508 0.49 +0.6 101,879 + GFF1508 0.49 -1.1 101,880 - GFF1508 0.49 +1.1 101,880 - GFF1508 0.49 +2.7 101,880 - GFF1508 0.49 -0.4 102,074 + GFF1508 0.70 -0.5 102,110 + GFF1508 0.74 -1.5 102,111 - GFF1508 0.75 -1.3 102,111 - GFF1508 0.75 -0.5 102,116 + GFF1508 0.75 -0.0 102,116 + GFF1508 0.75 -1.0 102,116 + GFF1508 0.75 -0.8 102,117 - GFF1508 0.75 +0.6 102,117 - GFF1508 0.75 -1.3 102,185 + GFF1508 0.83 -0.1 102,186 - GFF1508 0.83 -0.5 102,321 - +0.3 102,321 - -1.4 102,379 + +0.3 102,380 - -1.3 102,380 - +1.0 102,380 - -1.9 102,436 + GFF1509 0.10 +1.0 102,437 - GFF1509 0.10 +0.5 102,437 - GFF1509 0.10 +1.3 102,437 - GFF1509 0.10 -1.5
Or see this region's nucleotide sequence