Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1462 and GFF1463 are separated by 51 nucleotides GFF1463 and GFF1464 are separated by 12 nucleotides
GFF1462 - L-carnitine dehydratase/bile acid-inducible protein F, at 53,398 to 54,600
GFF1462
GFF1463 - Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1), at 54,652 to 55,713
GFF1463
GFF1464 - hypothetical protein, at 55,726 to 57,417
GFF1464
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.777 kb on + strand, within GFF1462 at 53.777 kb on + strand, within GFF1462 at 53.778 kb on - strand, within GFF1462 at 53.837 kb on + strand, within GFF1462 at 53.837 kb on + strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.838 kb on - strand, within GFF1462 at 53.932 kb on + strand, within GFF1462 at 53.952 kb on - strand, within GFF1462 at 54.270 kb on - strand, within GFF1462 at 54.776 kb on + strand, within GFF1463 at 54.797 kb on + strand, within GFF1463 at 54.798 kb on - strand, within GFF1463 at 55.037 kb on + strand, within GFF1463 at 55.038 kb on - strand, within GFF1463 at 55.038 kb on - strand, within GFF1463 at 55.038 kb on - strand, within GFF1463 at 55.451 kb on + strand, within GFF1463 at 55.451 kb on + strand, within GFF1463 at 55.451 kb on + strand, within GFF1463 at 55.556 kb on - strand, within GFF1463 at 56.138 kb on + strand, within GFF1464 at 56.379 kb on - strand, within GFF1464 at 56.606 kb on + strand, within GFF1464 at 56.606 kb on + strand, within GFF1464 at 56.607 kb on - strand, within GFF1464
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 53,777 + GFF1462 0.32 -0.3 53,777 + GFF1462 0.32 -1.5 53,778 - GFF1462 0.32 -2.9 53,837 + GFF1462 0.36 -3.3 53,837 + GFF1462 0.36 -0.5 53,838 - GFF1462 0.37 -1.1 53,838 - GFF1462 0.37 -0.7 53,838 - GFF1462 0.37 -0.9 53,838 - GFF1462 0.37 +2.0 53,838 - GFF1462 0.37 +0.4 53,932 + GFF1462 0.44 -1.5 53,952 - GFF1462 0.46 +0.1 54,270 - GFF1462 0.72 +0.5 54,776 + GFF1463 0.12 +1.1 54,797 + GFF1463 0.14 -0.0 54,798 - GFF1463 0.14 -0.3 55,037 + GFF1463 0.36 +0.7 55,038 - GFF1463 0.36 -0.5 55,038 - GFF1463 0.36 -0.0 55,038 - GFF1463 0.36 -2.4 55,451 + GFF1463 0.75 -2.0 55,451 + GFF1463 0.75 -0.9 55,451 + GFF1463 0.75 -1.0 55,556 - GFF1463 0.85 +1.3 56,138 + GFF1464 0.24 -0.0 56,379 - GFF1464 0.39 -0.7 56,606 + GFF1464 0.52 -0.8 56,606 + GFF1464 0.52 -0.0 56,607 - GFF1464 0.52 -0.4
Or see this region's nucleotide sequence