Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1399 and GFF1400 are separated by 39 nucleotides GFF1400 and GFF1401 are separated by 103 nucleotides
GFF1399 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 748,117 to 749,118
GFF1399
GFF1400 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 749,158 to 749,979
GFF1400
GFF1401 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 750,083 to 751,447
GFF1401
Position (kb) 749
750 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 748.162 kb on + strand at 748.163 kb on - strand at 748.163 kb on - strand at 748.163 kb on - strand at 748.510 kb on + strand, within GFF1399 at 749.182 kb on + strand at 749.182 kb on + strand at 749.183 kb on - strand at 749.213 kb on + strand at 749.213 kb on + strand at 749.213 kb on + strand at 749.213 kb on + strand at 749.214 kb on - strand at 749.214 kb on - strand at 749.214 kb on - strand at 749.215 kb on + strand at 749.215 kb on + strand at 749.215 kb on + strand at 749.215 kb on + strand at 749.216 kb on - strand at 749.216 kb on - strand at 749.216 kb on - strand at 749.216 kb on - strand at 749.216 kb on - strand at 749.282 kb on - strand, within GFF1400 at 749.482 kb on + strand, within GFF1400 at 749.482 kb on + strand, within GFF1400 at 749.483 kb on - strand, within GFF1400 at 749.483 kb on - strand, within GFF1400 at 749.746 kb on + strand, within GFF1400 at 749.894 kb on - strand, within GFF1400 at 749.894 kb on - strand, within GFF1400 at 749.968 kb on + strand at 749.978 kb on - strand at 749.978 kb on - strand at 750.084 kb on + strand at 750.084 kb on + strand at 750.084 kb on + strand at 750.084 kb on + strand at 750.216 kb on + strand at 750.216 kb on + strand at 750.216 kb on + strand at 750.216 kb on + strand at 750.216 kb on + strand at 750.216 kb on + strand at 750.216 kb on + strand at 750.216 kb on + strand at 750.217 kb on - strand at 750.217 kb on - strand at 750.217 kb on - strand at 750.217 kb on - strand at 750.217 kb on - strand at 750.315 kb on + strand, within GFF1401 at 750.504 kb on + strand, within GFF1401 at 750.504 kb on + strand, within GFF1401 at 750.504 kb on + strand, within GFF1401 at 750.621 kb on + strand, within GFF1401 at 750.675 kb on + strand, within GFF1401 at 750.676 kb on - strand, within GFF1401 at 750.676 kb on - strand, within GFF1401 at 750.678 kb on + strand, within GFF1401 at 750.678 kb on + strand, within GFF1401 at 750.678 kb on + strand, within GFF1401 at 750.696 kb on + strand, within GFF1401 at 750.696 kb on + strand, within GFF1401 at 750.696 kb on + strand, within GFF1401 at 750.697 kb on - strand, within GFF1401 at 750.855 kb on + strand, within GFF1401 at 750.855 kb on + strand, within GFF1401 at 750.856 kb on - strand, within GFF1401 at 750.856 kb on - strand, within GFF1401 at 750.917 kb on - strand, within GFF1401
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 748,162 + -2.4 748,163 - -3.1 748,163 - -0.4 748,163 - -1.1 748,510 + GFF1399 0.39 -0.1 749,182 + -2.7 749,182 + -2.3 749,183 - -0.4 749,213 + -0.4 749,213 + -0.0 749,213 + -2.8 749,213 + -0.3 749,214 - +0.5 749,214 - -2.5 749,214 - +0.3 749,215 + +0.7 749,215 + +0.1 749,215 + +0.8 749,215 + +0.4 749,216 - -0.7 749,216 - -0.5 749,216 - -0.9 749,216 - -1.1 749,216 - -0.7 749,282 - GFF1400 0.15 +0.2 749,482 + GFF1400 0.39 -3.8 749,482 + GFF1400 0.39 -0.7 749,483 - GFF1400 0.40 -2.6 749,483 - GFF1400 0.40 -0.4 749,746 + GFF1400 0.72 -1.8 749,894 - GFF1400 0.90 -0.9 749,894 - GFF1400 0.90 -2.1 749,968 + +0.8 749,978 - -1.2 749,978 - -1.7 750,084 + -1.1 750,084 + -0.1 750,084 + -1.1 750,084 + -0.7 750,216 + +0.3 750,216 + -0.9 750,216 + -0.2 750,216 + -0.0 750,216 + -1.3 750,216 + +0.6 750,216 + -0.9 750,216 + -0.1 750,217 - -0.4 750,217 - +0.4 750,217 - +2.4 750,217 - +1.0 750,217 - -3.0 750,315 + GFF1401 0.17 -3.1 750,504 + GFF1401 0.31 -0.7 750,504 + GFF1401 0.31 -0.3 750,504 + GFF1401 0.31 -0.1 750,621 + GFF1401 0.39 -1.6 750,675 + GFF1401 0.43 +1.7 750,676 - GFF1401 0.43 -1.7 750,676 - GFF1401 0.43 -0.1 750,678 + GFF1401 0.44 +1.0 750,678 + GFF1401 0.44 +0.4 750,678 + GFF1401 0.44 -2.3 750,696 + GFF1401 0.45 -2.0 750,696 + GFF1401 0.45 -0.2 750,696 + GFF1401 0.45 -1.4 750,697 - GFF1401 0.45 +1.9 750,855 + GFF1401 0.57 -0.7 750,855 + GFF1401 0.57 -0.7 750,856 - GFF1401 0.57 +0.4 750,856 - GFF1401 0.57 -0.7 750,917 - GFF1401 0.61 -0.9
Or see this region's nucleotide sequence