Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1394 and GFF1395 are separated by 3 nucleotides GFF1395 and GFF1396 are separated by 175 nucleotides GFF1396 and GFF1397 are separated by 6 nucleotides
GFF1394 - no description, at 742,517 to 743,341
GFF1394
GFF1395 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 743,345 to 743,872
GFF1395
GFF1396 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 744,048 to 745,085
GFF1396
GFF1397 - TRAP-type C4-dicarboxylate transport system, large permease component, at 745,092 to 746,990
GFF1397
Position (kb) 744
745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 743.076 kb on + strand, within GFF1394 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.800 kb on - strand, within GFF1395 at 743.830 kb on - strand at 743.830 kb on - strand at 743.891 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.934 kb on + strand at 743.935 kb on - strand at 744.133 kb on - strand at 744.274 kb on - strand, within GFF1396 at 744.274 kb on - strand, within GFF1396 at 744.408 kb on + strand, within GFF1396 at 744.408 kb on + strand, within GFF1396 at 744.423 kb on + strand, within GFF1396 at 744.423 kb on + strand, within GFF1396 at 744.423 kb on + strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.525 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.544 kb on - strand, within GFF1396 at 744.544 kb on - strand, within GFF1396 at 744.544 kb on - strand, within GFF1396 at 744.675 kb on + strand, within GFF1396 at 744.675 kb on + strand, within GFF1396 at 744.675 kb on + strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 745.036 kb on - strand at 745.036 kb on - strand at 745.207 kb on - strand at 745.269 kb on + strand at 745.270 kb on - strand at 745.506 kb on + strand, within GFF1397 at 745.506 kb on + strand, within GFF1397 at 745.507 kb on - strand, within GFF1397 at 745.507 kb on - strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.833 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.867 kb on - strand, within GFF1397 at 745.867 kb on - strand, within GFF1397 at 745.867 kb on - strand, within GFF1397
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 743,076 + GFF1394 0.68 -1.8 743,457 + GFF1395 0.21 -1.3 743,457 + GFF1395 0.21 -0.6 743,457 + GFF1395 0.21 +2.1 743,457 + GFF1395 0.21 -1.7 743,458 - GFF1395 0.21 +0.3 743,458 - GFF1395 0.21 -0.5 743,458 - GFF1395 0.21 -0.4 743,458 - GFF1395 0.21 -2.1 743,458 - GFF1395 0.21 +1.2 743,577 + GFF1395 0.44 +1.3 743,577 + GFF1395 0.44 +0.3 743,578 - GFF1395 0.44 +0.0 743,578 - GFF1395 0.44 +1.0 743,578 - GFF1395 0.44 -2.0 743,578 - GFF1395 0.44 -1.9 743,578 - GFF1395 0.44 -1.3 743,784 + GFF1395 0.83 +0.3 743,784 + GFF1395 0.83 -0.1 743,785 - GFF1395 0.83 +0.4 743,785 - GFF1395 0.83 +0.0 743,785 - GFF1395 0.83 -1.6 743,785 - GFF1395 0.83 +0.1 743,785 - GFF1395 0.83 -0.1 743,785 - GFF1395 0.83 -0.9 743,800 - GFF1395 0.86 +0.1 743,830 - +0.5 743,830 - -0.5 743,891 + +2.1 743,925 + -1.0 743,925 + -1.7 743,925 + -0.0 743,934 + +0.9 743,935 - +0.0 744,133 - -0.1 744,274 - GFF1396 0.22 -1.6 744,274 - GFF1396 0.22 -0.9 744,408 + GFF1396 0.35 -2.9 744,408 + GFF1396 0.35 -0.4 744,423 + GFF1396 0.36 -0.7 744,423 + GFF1396 0.36 -1.7 744,423 + GFF1396 0.36 -0.3 744,424 - GFF1396 0.36 -1.8 744,424 - GFF1396 0.36 -1.6 744,424 - GFF1396 0.36 +0.2 744,424 - GFF1396 0.36 -0.6 744,525 + GFF1396 0.46 +2.1 744,543 + GFF1396 0.48 -1.6 744,543 + GFF1396 0.48 -0.5 744,543 + GFF1396 0.48 -0.1 744,543 + GFF1396 0.48 -0.3 744,543 + GFF1396 0.48 +1.9 744,544 - GFF1396 0.48 +0.9 744,544 - GFF1396 0.48 -0.1 744,544 - GFF1396 0.48 +1.3 744,675 + GFF1396 0.60 -1.3 744,675 + GFF1396 0.60 -1.4 744,675 + GFF1396 0.60 +0.8 744,676 - GFF1396 0.61 -0.1 744,676 - GFF1396 0.61 +1.3 744,676 - GFF1396 0.61 +0.6 744,676 - GFF1396 0.61 +0.7 745,036 - -0.1 745,036 - +0.3 745,207 - -1.3 745,269 + -3.0 745,270 - -0.9 745,506 + GFF1397 0.22 +2.2 745,506 + GFF1397 0.22 -1.3 745,507 - GFF1397 0.22 -1.1 745,507 - GFF1397 0.22 -1.3 745,545 + GFF1397 0.24 -0.7 745,545 + GFF1397 0.24 +0.2 745,545 + GFF1397 0.24 -2.6 745,545 + GFF1397 0.24 -0.9 745,545 + GFF1397 0.24 -0.8 745,545 + GFF1397 0.24 +2.8 745,545 + GFF1397 0.24 +1.2 745,545 + GFF1397 0.24 +0.5 745,546 - GFF1397 0.24 +1.3 745,546 - GFF1397 0.24 +0.7 745,546 - GFF1397 0.24 -0.5 745,546 - GFF1397 0.24 -0.5 745,546 - GFF1397 0.24 -0.2 745,546 - GFF1397 0.24 -0.6 745,546 - GFF1397 0.24 -1.1 745,546 - GFF1397 0.24 -0.1 745,833 + GFF1397 0.39 +0.9 745,866 + GFF1397 0.41 -1.0 745,866 + GFF1397 0.41 +0.7 745,866 + GFF1397 0.41 -2.6 745,866 + GFF1397 0.41 -1.9 745,866 + GFF1397 0.41 +1.5 745,866 + GFF1397 0.41 +1.6 745,867 - GFF1397 0.41 +0.7 745,867 - GFF1397 0.41 +1.0 745,867 - GFF1397 0.41 +0.6
Or see this region's nucleotide sequence