Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1294 and GFF1295 are separated by 21 nucleotides GFF1295 and GFF1296 are separated by 117 nucleotides GFF1296 and GFF1297 are separated by 114 nucleotides
GFF1294 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 622,086 to 623,495
GFF1294
GFF1295 - FIG00455815: hypothetical protein, at 623,517 to 624,209
GFF1295
GFF1296 - putative lipoprotein, at 624,327 to 625,085
GFF1296
GFF1297 - Chromosome partition protein smc, at 625,200 to 628,715
GFF1297
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.629 kb on + strand, within GFF1294 at 622.630 kb on - strand, within GFF1294 at 622.644 kb on + strand, within GFF1294 at 622.722 kb on + strand, within GFF1294 at 622.723 kb on - strand, within GFF1294 at 623.026 kb on - strand, within GFF1294 at 623.181 kb on + strand, within GFF1294 at 623.181 kb on + strand, within GFF1294 at 623.181 kb on + strand, within GFF1294 at 623.217 kb on + strand, within GFF1294 at 623.217 kb on + strand, within GFF1294 at 623.218 kb on - strand, within GFF1294 at 623.218 kb on - strand, within GFF1294 at 623.219 kb on + strand, within GFF1294 at 623.219 kb on + strand, within GFF1294 at 623.219 kb on + strand, within GFF1294 at 623.220 kb on - strand, within GFF1294 at 623.220 kb on - strand, within GFF1294 at 623.236 kb on + strand, within GFF1294 at 623.236 kb on + strand, within GFF1294 at 623.457 kb on + strand at 623.457 kb on + strand at 623.457 kb on + strand at 623.546 kb on - strand at 623.770 kb on + strand, within GFF1295 at 623.770 kb on + strand, within GFF1295 at 623.770 kb on + strand, within GFF1295 at 623.771 kb on - strand, within GFF1295 at 623.788 kb on + strand, within GFF1295 at 623.788 kb on + strand, within GFF1295 at 623.788 kb on + strand, within GFF1295 at 623.788 kb on + strand, within GFF1295 at 623.788 kb on + strand, within GFF1295 at 623.788 kb on + strand, within GFF1295 at 623.789 kb on - strand, within GFF1295 at 623.789 kb on - strand, within GFF1295 at 623.789 kb on - strand, within GFF1295 at 623.789 kb on - strand, within GFF1295 at 623.789 kb on - strand, within GFF1295 at 624.061 kb on + strand, within GFF1295 at 624.133 kb on + strand, within GFF1295 at 624.133 kb on + strand, within GFF1295 at 624.133 kb on + strand, within GFF1295 at 624.134 kb on - strand, within GFF1295 at 624.134 kb on - strand, within GFF1295 at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.259 kb on + strand at 624.259 kb on + strand at 624.259 kb on + strand at 624.260 kb on - strand at 624.407 kb on - strand, within GFF1296 at 624.673 kb on + strand, within GFF1296 at 624.673 kb on + strand, within GFF1296 at 624.674 kb on - strand, within GFF1296 at 624.674 kb on - strand, within GFF1296 at 624.703 kb on + strand, within GFF1296 at 624.704 kb on - strand, within GFF1296 at 624.704 kb on - strand, within GFF1296 at 624.865 kb on + strand, within GFF1296 at 624.866 kb on - strand, within GFF1296 at 624.866 kb on - strand, within GFF1296 at 624.866 kb on - strand, within GFF1296 at 624.866 kb on - strand, within GFF1296 at 624.964 kb on + strand, within GFF1296 at 625.097 kb on - strand at 625.164 kb on + strand at 625.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 622,629 + GFF1294 0.39 -2.4 622,630 - GFF1294 0.39 -0.4 622,644 + GFF1294 0.40 -0.6 622,722 + GFF1294 0.45 +0.8 622,723 - GFF1294 0.45 -1.6 623,026 - GFF1294 0.67 -1.1 623,181 + GFF1294 0.78 -0.4 623,181 + GFF1294 0.78 -1.8 623,181 + GFF1294 0.78 -0.2 623,217 + GFF1294 0.80 -1.1 623,217 + GFF1294 0.80 -1.2 623,218 - GFF1294 0.80 +1.6 623,218 - GFF1294 0.80 -1.8 623,219 + GFF1294 0.80 +1.2 623,219 + GFF1294 0.80 -2.0 623,219 + GFF1294 0.80 -1.0 623,220 - GFF1294 0.80 -1.0 623,220 - GFF1294 0.80 -1.3 623,236 + GFF1294 0.82 -0.1 623,236 + GFF1294 0.82 +0.3 623,457 + -1.2 623,457 + +0.4 623,457 + -1.6 623,546 - -0.1 623,770 + GFF1295 0.37 -2.0 623,770 + GFF1295 0.37 -0.1 623,770 + GFF1295 0.37 -1.6 623,771 - GFF1295 0.37 -0.5 623,788 + GFF1295 0.39 -1.4 623,788 + GFF1295 0.39 +0.4 623,788 + GFF1295 0.39 -2.4 623,788 + GFF1295 0.39 -0.9 623,788 + GFF1295 0.39 +0.7 623,788 + GFF1295 0.39 -2.7 623,789 - GFF1295 0.39 -3.5 623,789 - GFF1295 0.39 -0.8 623,789 - GFF1295 0.39 -3.1 623,789 - GFF1295 0.39 -0.4 623,789 - GFF1295 0.39 -1.6 624,061 + GFF1295 0.78 -0.2 624,133 + GFF1295 0.89 +1.3 624,133 + GFF1295 0.89 +0.3 624,133 + GFF1295 0.89 -0.7 624,134 - GFF1295 0.89 -0.7 624,134 - GFF1295 0.89 -0.9 624,211 + +1.1 624,211 + +0.3 624,211 + -0.5 624,211 + -0.2 624,211 + -0.4 624,211 + -0.9 624,211 + -2.0 624,211 + -2.1 624,212 - -0.4 624,212 - -2.6 624,212 - +0.1 624,212 - -1.6 624,212 - -2.3 624,212 - -3.7 624,212 - +2.3 624,212 - +0.8 624,212 - -1.3 624,259 + -0.9 624,259 + -1.3 624,259 + +0.4 624,260 - -0.3 624,407 - GFF1296 0.11 +0.3 624,673 + GFF1296 0.46 -0.7 624,673 + GFF1296 0.46 +2.0 624,674 - GFF1296 0.46 +0.5 624,674 - GFF1296 0.46 +0.2 624,703 + GFF1296 0.50 +0.4 624,704 - GFF1296 0.50 -2.9 624,704 - GFF1296 0.50 -2.7 624,865 + GFF1296 0.71 -2.2 624,866 - GFF1296 0.71 +1.0 624,866 - GFF1296 0.71 -1.7 624,866 - GFF1296 0.71 -2.7 624,866 - GFF1296 0.71 +0.7 624,964 + GFF1296 0.84 +0.9 625,097 - -1.9 625,164 + +0.3 625,164 + +0.9
Or see this region's nucleotide sequence