Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1277 and GFF1278 are separated by 52 nucleotides GFF1278 and GFF1279 overlap by 4 nucleotides GFF1279 and GFF1280 are separated by 13 nucleotides
GFF1277 - Alkanesulfonates-binding protein, at 607,159 to 608,130
GFF1277
GFF1278 - no description, at 608,183 to 608,305
GFF1278
GFF1279 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 608,302 to 609,135
GFF1279
GFF1280 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,149 to 609,856
GFF1280
Position (kb) 608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 607.289 kb on + strand, within GFF1277 at 607.290 kb on - strand, within GFF1277 at 607.290 kb on - strand, within GFF1277 at 607.469 kb on + strand, within GFF1277 at 607.469 kb on + strand, within GFF1277 at 607.470 kb on - strand, within GFF1277 at 607.470 kb on - strand, within GFF1277 at 607.587 kb on - strand, within GFF1277 at 607.587 kb on - strand, within GFF1277 at 607.619 kb on + strand, within GFF1277 at 607.619 kb on + strand, within GFF1277 at 607.619 kb on + strand, within GFF1277 at 607.620 kb on - strand, within GFF1277 at 607.620 kb on - strand, within GFF1277 at 607.620 kb on - strand, within GFF1277 at 607.679 kb on + strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.680 kb on - strand, within GFF1277 at 607.692 kb on - strand, within GFF1277 at 607.692 kb on - strand, within GFF1277 at 607.805 kb on + strand, within GFF1277 at 607.806 kb on - strand, within GFF1277 at 607.806 kb on - strand, within GFF1277 at 608.061 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.156 kb on - strand at 608.156 kb on - strand at 608.156 kb on - strand at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.285 kb on - strand, within GFF1278 at 608.453 kb on - strand, within GFF1279 at 608.659 kb on + strand, within GFF1279 at 608.660 kb on - strand, within GFF1279 at 608.660 kb on - strand, within GFF1279 at 608.783 kb on - strand, within GFF1279 at 608.783 kb on - strand, within GFF1279 at 608.806 kb on + strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.942 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.954 kb on - strand, within GFF1279 at 609.052 kb on + strand at 609.052 kb on + strand at 609.052 kb on + strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 607,289 + GFF1277 0.13 -2.9 607,290 - GFF1277 0.13 -1.2 607,290 - GFF1277 0.13 -0.7 607,469 + GFF1277 0.32 +0.7 607,469 + GFF1277 0.32 +1.1 607,470 - GFF1277 0.32 -1.5 607,470 - GFF1277 0.32 +0.8 607,587 - GFF1277 0.44 -1.6 607,587 - GFF1277 0.44 -0.3 607,619 + GFF1277 0.47 -0.5 607,619 + GFF1277 0.47 -0.7 607,619 + GFF1277 0.47 -0.7 607,620 - GFF1277 0.47 -3.4 607,620 - GFF1277 0.47 +0.8 607,620 - GFF1277 0.47 +0.3 607,679 + GFF1277 0.53 -0.9 607,680 - GFF1277 0.54 -1.4 607,680 - GFF1277 0.54 +0.3 607,680 - GFF1277 0.54 -2.4 607,680 - GFF1277 0.54 +0.3 607,680 - GFF1277 0.54 -2.7 607,680 - GFF1277 0.54 -2.6 607,680 - GFF1277 0.54 -3.3 607,692 - GFF1277 0.55 -0.8 607,692 - GFF1277 0.55 +0.3 607,805 + GFF1277 0.66 +1.4 607,806 - GFF1277 0.67 -2.3 607,806 - GFF1277 0.67 -0.2 608,061 + -0.7 608,155 + +0.9 608,155 + +1.6 608,155 + +0.0 608,155 + +1.4 608,156 - -2.1 608,156 - -1.3 608,156 - -0.5 608,221 + GFF1278 0.31 -1.8 608,221 + GFF1278 0.31 -1.7 608,221 + GFF1278 0.31 -1.7 608,221 + GFF1278 0.31 -1.8 608,221 + GFF1278 0.31 -0.5 608,221 + GFF1278 0.31 -1.1 608,222 - GFF1278 0.32 -0.4 608,222 - GFF1278 0.32 +2.6 608,222 - GFF1278 0.32 -1.5 608,222 - GFF1278 0.32 -0.5 608,222 - GFF1278 0.32 -1.5 608,266 + GFF1278 0.67 -3.5 608,266 + GFF1278 0.67 -1.6 608,266 + GFF1278 0.67 +1.0 608,284 + GFF1278 0.82 +0.7 608,284 + GFF1278 0.82 -1.3 608,284 + GFF1278 0.82 -0.4 608,285 - GFF1278 0.83 -1.1 608,453 - GFF1279 0.18 -1.4 608,659 + GFF1279 0.43 -0.2 608,660 - GFF1279 0.43 +0.9 608,660 - GFF1279 0.43 -2.9 608,783 - GFF1279 0.58 +1.6 608,783 - GFF1279 0.58 -2.1 608,806 + GFF1279 0.60 -0.9 608,807 - GFF1279 0.61 -0.9 608,807 - GFF1279 0.61 -0.9 608,807 - GFF1279 0.61 -2.9 608,942 + GFF1279 0.77 -2.8 608,953 + GFF1279 0.78 +1.0 608,953 + GFF1279 0.78 -1.3 608,953 + GFF1279 0.78 -1.1 608,954 - GFF1279 0.78 +1.7 609,052 + -0.9 609,052 + -1.0 609,052 + -0.2 609,053 - +1.2 609,053 - +1.3 609,053 - -3.6 609,053 - +0.5
Or see this region's nucleotide sequence